Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1674 210 2e-49 >seq1674 Length=2441 Score = 210 bits (232), Expect = 2e-49 Identities = 421/619 (68%), Gaps = 4/619 (1%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||||||||||||||| || || | |||| |||||| |||||||||||||||||| Sbjct 1695 CCGCTGCTGACGACGAAGCGCGTCTTCTGGCGCGGCGTGTGCGAGGAGCTGCTGTGGTTT 1754 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | || |||||| | ||| ||| | ||| ||| | |||||| || Sbjct 1755 CTGCGCGGCCAGACGAACGCGAAGCTGCTGAGCGACAAGGGCGTGCACATCTGGAGCGAC 1814 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGGCGACTT 34401 |||| || || | ||| || |||| || ||| | | | || | ||||| ||| | Sbjct 1815 AACGGCTCGCGCGCCTTCCTCGACAGCCGCGGGCTGCACGACTACG-AGGAGATGGACCT 1873 Query 34402 GGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGC 34461 |||||||| ||||| ||||||||| ||||||| || |||| ||| | || ||| | Sbjct 1874 TGGCCCGGTGTACGGCTTCCAGTGGCGACACTTCGGCGCGGCGTACACGCGGCACGACGA 1933 Query 34462 GGACTATTC-GGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGA 34520 ||||| || |||| || | || ||||| | | | | | | || || || || Sbjct 1934 CGACTACTCCGGGAATGGCATCG-ACCAGATCCGGCAGATCGTAGAGACGCTGCGCACGA 1992 Query 34521 ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGG 34580 |||| |||||| | | || | | ||||||||||||| | || | ||||| Sbjct 1993 ACCCCGATGACCGGCGCATGATACTCACCGCGTGGAACCCGTGCGCGCTGCACGCGATGG 2052 Query 34581 CGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCC 34640 ||||||| ||||||||| |||| || ||||||| || || ||||| |||||| Sbjct 2053 CGCTCCCACCGTGCCACCTCCTCGCGCAGTTCTACGCGAACAACGGCGAGCTCTCCTGCA 2112 Query 34641 AGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACG 34700 ||| || || || ||| | |||||||| | || |||||||||||||| || |||| Sbjct 2113 TGCTGTACCAGCGCTCGTGCGACATGGGCCTCGGCGTGCCGTTCAACATCGCGTCGTACG 2172 Query 34701 CTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATA 34760 | ||||| ||| | | || || | | | ||| ||| || || ||||||||||| | Sbjct 2173 CGCTGCTGACGATCCTCATGGCGAAGGCGGCGGGATTGCGGCCGGGCGAGCTGGTGCACA 2232 Query 34761 CGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAAC 34820 || | || |||||||| | ||| |||||| | |||| || | |||||||| | Sbjct 2233 CGCTCGGCGATGCGCACGTGTACTCCAACCACGTGGAGCCCTGCCTGGAGCAGCTGCAGC 2292 Query 34821 GAGAGCCCCGACCGTTCCC 34839 | | ||| || |||| || Sbjct 2293 GGGTGCCGCGGGCGTTTCC 2311 Score = 210 bits (232), Expect = 2e-49 Identities = 421/619 (68%), Gaps = 4/619 (1%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 || |||| || ||| | || |||||||| | || |||| | |||||| ||| Sbjct 2311 GGAAACGCCCGCGGCACCCGCTGCAGCTGCTCCAGGCAGGGCTCCACGTGGTTGGAGTAC 2252 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCG 6625 | |||||||| || | ||| ||||||||||| || || ||| ||| | | | || Sbjct 2251 ACGTGCGCATCGCCGAGCGTGTGCACCAGCTCGCCCGGCCGCAATCCCGCCGCCTTCGCC 2192 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 || | | ||| ||||| ||||| || |||||||||||||| || | |||||||| Sbjct 2191 ATGAGGATCGTCAGCAGCGCGTACGACGCGATGTTGAACGGCACGCCGAGGCCCATGTCG 2132 Query 6686 CCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGG 6745 | ||| || || || ||| |||||| ||||| || || ||||||| || |||| Sbjct 2131 CACGAGCGCTGGTACAGCATGCAGGAGAGCTCGCCGTTGTTCGCGTAGAACTGCGCGAGG 2072 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 ||||||||| |||||||||||| | || | ||||||||||||| | | Sbjct 2071 AGGTGGCACGGTGGGAGCGCCATCGCGTGCAGCGCGCACGGGTTCCACGCGGTGAGTATC 2012 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCT 6865 || | | |||||| |||||| || || || | | | | | | ||||| || | Sbjct 2011 ATGCGCCGGTCATCGGGGTTCGTGCGCAGCGTCTCTACGATCTGCCGGATCTGGT-CGAT 1953 Query 6866 CCCTGTCCC-GAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924 || |||| || ||||| | ||| || | ||| |||| || ||||||| |||||| Sbjct 1952 GCCATTCCCGGAGTAGTCGTCGTCGTGCCGCGTGTACGCCGCGCCGAAGTGTCGCCACTG 1893 Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG-GGAACCCCCGCTTGTCCA 6983 ||| ||||| |||||||| | ||| ||||| | || | | | ||| || |||| | Sbjct 1892 GAAGCCGTACACCGGGCCAAGGTCCATCTCCT-CGTAGTCGTGCAGCCCGCGGCTGTCGA 1834 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGG 7043 | ||| | || || |||| || |||||| | ||| ||| | ||| ||| | Sbjct 1833 GGAAGGCGCGCGAGCCGTTGTCGCTCCAGATGTGCACGCCCTTGTCGCTCAGCAGCTTCG 1774 Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103 |||||| || | || |||||||||||||||||| |||||| |||| | || | Sbjct 1773 CGTTCGTCTGGCCGCGCAGAAACCACAGCAGCTCCTCGCACACGCCGCGCCAGAAGACGC 1714 Query 7104 GTTTCGTCGTCAGCAGCGG 7122 | ||||||||||||||||| Sbjct 1713 GCTTCGTCGTCAGCAGCGG 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246312983120