Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq137 127 5e-24 seq149 95.1 3e-14 >seq137 Length=29121 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || ||||| || |||| |||||| || |||| || | || ||| Sbjct 22723 AGCACAAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGCCAGCGTGCGGCCCTCT 22664 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| ||||| || || |||||||| Sbjct 22663 TCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 22604 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| || |||||||| | ||||| || | || ||||||| Sbjct 22603 TGAATCTTCGCCTTCACGTTCTCAATGGTGTCACTAGCCTCCACCTCGAGCGCGATCGTC 22544 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 22543 TTGCCCGTCA 22534 >seq149 Length=27622 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || | ||||| | |||| || |||||||||| ||| ||||| Sbjct 9234 CAATTTTATAATGTGTTGATTACCTCCCATGGATTAATTATGATTTTTGCCTTTATTATG 9293 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||||||| || ||||| ||||| || | || ||||| ||||| ||||||| Sbjct 9294 CCTGTTATGATGGGTGGTTTGACAAATTATTTTGCACCAGTAATGGTTGGTTTTCCTGAT 9353 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTG 7706 |||| |||||| | | |||||||| |||||||| Sbjct 9354 ATGGTTTTTCCCCGATTAAACAATATGAGTTTTTG 9388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192487333112474