Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1674 138 8e-28 >seq1674 Length=2441 Score = 138 bits (152), Expect = 8e-28 Identities = 391/587 (67%), Gaps = 18/587 (3%) Strand=Plus/Minus Query 27145 GGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGT 27204 || |||||||| | ||| ||||| || || || || ||||| || | ||| ||||| Sbjct 2272 GGCTCCACGTGGTTGGAGTACACGTGCGCATCGCCGAGCGTGTGCACCAGCTCGCCCGGC 2213 Query 27205 T-CTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 27263 | | |||| | | | ||||| | | ||| || || | ||| |||||||| || Sbjct 2212 CGCAATCCCGCCGCCTTC-GCCATGAGGATCGTCAGCAGCGCGTACGACGCGATGTTGAA 2154 Query 27264 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATC 27323 || || ||||| |||||||| | ||| | |||||| ||| || |||||||| || | Sbjct 2153 CGGCACGCCGAGGCCCATGTCGCACGAGCGCTGGTACAGCATGCAGGAGAGCTCGCCGTT 2094 Query 27324 GCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 27383 | | |||| ||||| | | ||||||||| || || ||||| | || | Sbjct 2093 GTTCGCGTAGAACTGCGCGAGGAGGTGGCACGGTGGGAGCGCCATCGCGTGCAGCGCGCA 2034 Query 27384 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 27443 |||||||| ||| | || ||||||| ||| || ||||| | || || | | Sbjct 2033 CGGGTTCCACGCGGTGAGTATCATGCGCCGGTCATCGGGGTT---CGTGCGCAGCGTCTC 1977 Query 27444 GGCGTTTTGCAG---CTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTC-CGTGT 27499 || | ||| | ||| || | || |||| |||||||| | || || | ||||| Sbjct 1976 TACGATCTGCCGGATCTGGTCGATGCCATTCCCGGAGTAGTCGTCG-TCGTGCCGCGTGT 1918 Query 27500 ACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC 27559 || | || ||||| || | ||| ||||| ||||||||||| || ||||| ||| || Sbjct 1917 ACGCCGCGCCGAAGTGTCGCCACTGGAAGCCGTACACCGGGCCAAGGTCCATCTCCTCGT 1858 Query 27560 TGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 27618 || | | ||||| | |||| | ||| | | || |||||| || |||||| | Sbjct 1857 AGT-CGTGCAGCCCGCGGCTGTCGAGGAAGGCGCGCGAGCCGTTGTCGCTCCAGATGTGC 1799 Query 27619 ACCCCCTTCTCGGAGAGCTCTTTGGAGTT--TGTGGACCCTCTGACGAACCACAGCAGCT 27676 || ||||| ||| ||| || | ||| | ||| | | | || ||||||||||||| Sbjct 1798 ACGCCCTTGTCGCTCAGCAGCTTCGCGTTCGTCTGGCCGCGCAGA--AACCACAGCAGCT 1741 Query 27677 CCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 |||| ||| ||| | ||| ||||| | ||| ||||| || || || Sbjct 1740 CCTCGCAC-ACGCCGCGCCAGAAGACGCGCTTCGTCGTCAGCAGCGG 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369494270827601