Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq78 102 1e-16 >seq78 Length=36107 Score = 102 bits (112), Expect = 1e-16 Identities = 295/447 (66%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 |||||||| ||| || || || || || | ||| | ||| || || || || Sbjct 13137 CATGCAAAGTCAGTGTGCAGGCCCTCGTCGCGCGAAATGAGTTCATTGCTGAACGTCAGC 13196 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || ||||| || |||||||| || | || ||| || || || ||||| Sbjct 13197 CCTGGCATGAGGCCACGCTTCTTGAGCCAGAACAGCGCGCAGAACGAGCCGGAGAAGAAG 13256 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAAC--TGGCTTCGTTGTGTA 48318 ||||| || || || ||||| ||| ||| | ||| | ||| | ||| | || | | Sbjct 13257 ATGCCCTCAACAGCGGCAAACGCGACAAGGCGCTCAGCAAAACACTCGCTGC--TGCGGA 13314 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 ||||| |||||| | ||| ||||||| | || || || ||| || || | || Sbjct 13315 TCCACTTAGTTGCCCACTTAGCTTTCTTCTCAATGCACGGGATAGTTGAGATGGCGTGAA 13374 Query 48379 AGAGAAAGtttttttC-ATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 | | || ||||| | || | || | | |||||| || | | || | ||||| Sbjct 13375 ACAAGCGGTCCTTTTCGACTG-TGTCCGTGATGTAAGTGTCCAGCAGAACAGAGTACATC 13433 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG-TGAT 48496 || ||||| | || || || || ||||| || || || || || | | | || | ||| Sbjct 13434 TCAGAGTGCACGTTCTCGATGGCGATCTGGAACCCATAGAAGCAGCGCACCTCCGGTGA- 13492 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| |||||||| || || | |||| ||||| || || |||||||| || || Sbjct 13493 CTGCACCTCCGTCATGAACCGCTGTGCCAGGTTCTCCAGCACGATCCCATCACTTGCGGC 13552 Query 48557 AAAAAATGCTAATACATGTTTAATAAA 48583 ||||||||| || || || || || || Sbjct 13553 AAAAAATGCCAACACGTGCTTGATGAA 13579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694643870073440