Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq62 104 3e-17 >seq62 Length=39022 Score = 104 bits (114), Expect = 3e-17 Identities = 205/298 (69%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| || || |||||||| |||||| || || | ||| || || |||||| || Sbjct 15413 TCTTCCTTACCCGTATTCTTCTTAAGAAGAAGAAAGTTCATGATGTCGCCATGCCAAGGC 15472 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 ||||| || || || || ||||| || || || || ||||| | ||| | || Sbjct 15473 TCTAGGTAAATTGCGATCGCACCCTTGCGCCTACCGCCGCCTTGATCCACATAACGTGCC 15532 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 || ||||| | || | | |||||| | || |||||| |||||||| || ||||| | | Sbjct 15533 GTATTATTCCACACACGTAGCATTGGCACAAGGCCGTTGGATGTACCGTTCGTTCCCGCA 15592 Query 76838 ATATAACTTCCA-CATGCA-CGAATATTACTAA--TAGATAGGCCTATTCCTCCTGCCAT 76893 |||||||| || || || || || || || | ||| ||| || || || ||| Sbjct 15593 ATATAACTCCCGGCA--CAGCGGATGTTGTGAACGTGGAT--GCCGATACCACCAGCCGA 15648 Query 76894 TTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 ||| ||||| || || | || | ||||| ||||||||||| || || |||||| Sbjct 15649 TTTGCTGATTATGGCGCACTGCTTTAGGGTGTCGTAGATGCCCTCAATGCTGTCATCC 15706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712908814566720