Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq1674 89.7 3e-13 >seq1674 Length=2441 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 1205 ATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCG 1264 ||||| || | ||||||||| || | ||| | |||| | ||||| |||||| Sbjct 2049 ATGGCGCTCCCACCGTGCCACCTCCTCGCGCAGTTCTACGCGAACAACGGCGAGCTCTC- 2107 Query 1265 CTGCAGG-TCTACCAGCGCAGCGCG-GACATGTTCCTCGGTGTGCCGTTCAATATCGCCT 1322 ||||| | | ||||||||| || | |||||| |||||| ||||||||||| ||||| | Sbjct 2108 CTGCATGCTGTACCAGCGCT-CGTGCGACATGGGCCTCGGCGTGCCGTTCAACATCGCGT 2166 Query 1323 CGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGA 1382 |||||||||| || || | | | ||| || ||| || ||||| ||| |||||| Sbjct 2167 CGTACGCGCTGCTGACGATCCTCATGGCGAAGGCGGCGGGATTGCGGCCGGGCGAGCTGG 2226 Query 1383 TCTGGACCGGCGGCGACTGC-CACATCTACAACAACCACGTCGA 1425 | || |||||| ||| ||| | ||| ||||||||| || Sbjct 2227 TGCACACGCTCGGCGA-TGCGCACGTGTACTCCAACCACGTGGA 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296120838276771