Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq137 165 2e-35 seq464 100 6e-16 seq155 89.7 1e-12 seq1753 86.0 1e-11 >seq137 Length=29121 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||| ||| || ||||| |||||||| || Sbjct 22739 ACCACCACGGAGACGGAGCACAAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGC 22680 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| || || || || || ||||||||||||| | || ||||| ||| Sbjct 22679 CAGCGTGCGGCCCTCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGCGG 22620 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| || || ||| | || || ||||| ||| || || Sbjct 22619 GATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCAATGGTGTCACTAGCCTCCAC 22560 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| | ||||||||| ||||||| ||||| || || |||||||| || Sbjct 22559 CTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATATT 22509 >seq464 Length=13466 Score = 100 bits (110), Expect = 6e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 273773 CAGTTTCGTGAAAATGTACC-TGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAAC 273831 |||||| ||||| ||||| | ||| | ||||||||| || ||| | ||| | | ||||| Sbjct 1519 CAGTTTTGTGAAGATGTAGCGTGGGGC-CGCATGGTCGTTACCAACCTGCTGACGCGAAC 1577 Query 273832 CAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 | ||||||||||| |||| ||| ||| |||||||| | ||| | | | ||| |||| Sbjct 1578 CGAACTGACCCTCCGGCACAAGCAGGTTGATGTTGTTACCACCCGTGAAGTTCTGTGCCA 1637 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCG 273938 | || | || ||| |||| || || ||||| || ||||| ||||| Sbjct 1638 TTTTAATCATCGTCTCCTGCAGCGAGACCTCACCATGGTGGAAGGCG 1684 >seq155 Length=27196 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 43999 GAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGG 44058 ||| ||||||| ||||| |||||| | || || | || | ||| || || ||||| || Sbjct 4491 GAGCTGTACGGCAAGGTGCAGGAGGTGCCGCAGTCGGAGAAGACGCCCTTCTATCCGCGC 4550 Query 44059 AGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCG 44118 |||||||||| |||||||||||| ||||||| ||||| || || || ||||| Sbjct 4551 AGTCCATATGCTGTGGCGAAGCTCTATGCCTTCTGGATGACGGTGAACTACCGTGAGTCA 4610 Query 44119 TATGGGATGTTCGTTTGTAATTCGAT-TTGTTTCAATCACGAA 44160 |||| ||||| | || || || ||||| ||||||||| Sbjct 4611 TATGATATGTTTGCGTGCAACGGTATCCTGTTT-AATCACGAA 4652 >seq1753 Length=2219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || ||||| ||| || ||||||||||| || ||||| || || ||| | || || ||| Sbjct 2218 TGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTCTCAATGGTG 2159 Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 || || || || ||||| | ||||||||| ||||||| ||||| ||||| || ||| Sbjct 2158 TCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATTTGC 2099 Query 283098 AT 283099 || Sbjct 2098 AT 2097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046700696025634