Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq137 122 6e-23 seq1753 89.7 4e-13 >seq137 Length=29121 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| ||||| ||||| ||||| ||||| || || || ||| | || || Sbjct 22721 CACAAGGTGCAGCGTCGATTCCTTCTGGATATTGTAGTCCGCCAGCGTGCGGCCCTCTTC 22662 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||||||||||| | |||||| || | || | || ||||| ||| Sbjct 22661 GAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 22602 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| |||| | |||| | |||||||| | |||||||| | || ||||||| Sbjct 22601 AATCTTCGCCTTC-ACGTTCTCAATGGTGTCACTAGCCTCCACCTCGAGCGCGATCGTCT 22543 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || |||||||| ||||| ||||| Sbjct 22542 TGCCCGTCAGCGTCTTCACAAAGATCTGCAT 22512 >seq1753 Length=2219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 44215 CTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGG 44273 |||||| || | || | || ||||| ||| |||||| ||||| |||| | |||| Sbjct 2219 CTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCAC-GTTCTCAATGG 2161 Query 44274 TGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333 ||||| || |||||||| | || |||||||| ||||| || ||||||||||| |||| Sbjct 2160 TGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATTT 2101 Query 44334 GCATGATG 44341 |||||||| Sbjct 2100 GCATGATG 2093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977803823407