Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq137 145 2e-29 seq1753 107 5e-18 >seq137 Length=29121 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT-CAGA 177982 || || || ||||| || || || || || |||||| | |||||||||| | ||| || Sbjct 22515 CAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGG-AGGCTAGTGA 22573 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||| |||||||| || |||||||||||||| || || ||||| ||||||||||| Sbjct 22574 CACCATTGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCA 22633 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | || ||||| ||||| || ||||||||||| || | || || || || || || | Sbjct 22634 GAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGAGGGCCGCACGCTGGCGGACTACAATAT 22693 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || ||||| || ||||| ||||| Sbjct 22694 CCAGAAGGAATCGACGCTGCACCTTGT 22720 >seq1753 Length=2219 Score = 107 bits (118), Expect = 5e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || || |||||| | ||||||||||| | ||| Sbjct 2100 CAAATTTTCGTGAAGACGCTGACGGGCAAGACGATCGCGCTCGAGGTGGAGGCCAGCGAC 2159 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||| |||||||| || |||||||||||||| || || ||||| ||||||||||| Sbjct 2160 ACCATTGAGAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCGCCGGACCAGCA 2218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203686921123974