Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20grayi_20[genbank_20GCA_5F000691245.1_202014-05-15] 2,871 sequences; 20,934,132 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq137 145 7e-30 seq1753 84.2 2e-11 >seq137 Length=29121 Score = 145 bits (160), Expect = 7e-30 Identities = 178/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 41628 CATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTAT 41687 |||||| || || || ||||| | ||| || |||||||| |||||||| || || | Sbjct 22745 CATCACA-CCACCACGGAGACGGAGCACAAGGTGCAGCGTCGATTCCTTCTGGATATTGT 22687 Query 41688 AGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGT 41747 |||| | || ||||| | || ||||||||||||||||| || ||||| | ||| |||| Sbjct 22686 AGTCCGCCAGCGTGCGGCCCTCTTCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGT 22627 Query 41748 CCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTC 41806 ||| || | || |||||||||| ||| | || | ||||| | | ||||| || Sbjct 22626 CCGGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCAATGGTGTCACTA 22568 Query 41807 GACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | ||||||||| | || ||||| || |||||||||||||| || || |||||||| || Sbjct 22567 GCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATATT 22509 >seq1753 Length=2219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 41740 CTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG- 41798 ||| ||||||| || | || |||||||||| ||| | || || | ||| || | Sbjct 2219 CTGCTGGTCCGGCGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCACGTTCTCAATGG 2161 Query 41799 TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCT 41858 ||||||| | ||||||||| | || ||||| || |||||||||||||| |||||||| | Sbjct 2160 TGTCGCTGGCCTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATTT 2101 Query 41859 GCATG 41863 ||||| Sbjct 2100 GCATG 2096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462287409065200