Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq249 84.2 2e-11 >seq249 Length=322816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 259/398 (65%), Gaps = 2/398 (1%) Strand=Plus/Plus Query 18791 GGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTG 18850 ||| ||||| || | || || || || ||| |||| ||||| ||||| |||||||| | Sbjct 217258 GGATCTTGGTCCTGTCTATGGATTTCAATGGCGACACTTTGGTGCGGAGTATAAAGATTA 217317 Query 18851 TCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAA 18910 | || | || ||| |||| | ||||| | || || | || || || || Sbjct 217318 TAAAACCAATTATGATGGAAAAGGGGTGGATCAAATTAAACAAGTGGTGGAGACCATAAA 217377 Query 18911 AACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTT 18970 |||||| ||||| || |||||||| | | | |||||||| || | | | Sbjct 217378 AACAAATCCAGATGATAGAAGAATGATTGTCACTGCATGGAATCCCGCGGCTTTATCACG 217437 Query 18971 AATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATC 19030 ||||| |||| || ||||| | |||| ||| || || || || || || ||||| Sbjct 217438 AATGGCTTTACCACCTTGTCATATGTTAGCTCAATTCTATGTAAGTAATGGGGAGTTATC 217497 Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGG 19090 ||| | || || | || | |||||||| || || || || || || ||||| Sbjct 217498 CTGTATGTTGTATCAACGCTCCTGTGATATGGGACTGGGAGTTCCATTTAATATTGCCTC 217557 Query 19091 ATATGCACTTCTTACCTACATAG-TAGCGCATGTTACAGGACTTAAAACCGGAGATTTAA 19149 ||||| || ||| | | | | ||| | | |||||||| ||| | || || | Sbjct 217558 TTATGCG-TTATTAACAATTCTGATTGCGAAGGCAACAGGACTGAAACCAGGGGAACTCG 217616 Query 19150 TTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 |||| ||| | |||||||||||| | || ||||||| Sbjct 217617 TTCACACACTTGGGGATGCACATGTGTATAAGAATCAT 217654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399502446803355