Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12]
319 sequences; 29,822,211 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq249 156 3e-33
>seq249
Length=322816
Score = 156 bits (172), Expect = 3e-33
Identities = 348/517 (67%), Gaps = 13/517 (3%)
Strand=Plus/Minus
Query 101792 GCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAA 101851
||||| |||||||| ||||| | ||||||||| || | |||||||| ||||||
Sbjct 217554 GCAATATTAAATGGAACTCCCAGTCCCATATCACAGGAGCGTTGATACAACATACAGGAT 217495
Query 101852 AGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTA 101911
| || |||| || ||||| |||||| ||| | ||||||||| || || |||||
Sbjct 217494 AACTCCCCATTACTTACATAGAATTGAGCTAACATATGACAAGGTGGTAAAGCCATTCGT 217435
Query 101912 GGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971
| | | | |||||| ||| | | ||| |||||||| || |||||||||
Sbjct 217434 GATAAAGCCGCGGGATTCCATGCAGTGACAATCATTCTTCTATCATCTGGATTTGTTTTT 217375
Query 101972 ATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACA 102031
|| || || | || ||||| | ||| || || |||| ||| | ||||| | | |
Sbjct 217374 ATGGTCTCCACCACTTGTTTAATTTGATCCACCCCTTTTCCATCATAATTGGTTTTATAA 217315
Query 102032 CCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATC---T 102088
||||||| || || || || || | ||| ||||||||||| ||||| |||||||| |
Sbjct 217314 TCTTTATACTCCGCACCAAAGTGTCGCCATTGAAATCCATAGACAGGACCAAGATCCATT 217255
Query 102089 CCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCC 102148
|||||| | || | || ||| | | || || || | | ||| ||||| |||||
Sbjct 217254 TCTTCATAT---TCGTGTAATCCACGACTGTCCAAGAAGGCACGAGAGCCATTTCCATCC 217198
Query 102149 CAAATGTGCACGCCAGCTGCTGATAGC-TCTTTGCTGTCAGTAGATCCTCTGATAAACCA 102207
|||||||| || || | ||| |||||| | || || | || ||||||
Sbjct 217197 CAAATGTGAACTCCTTTATCACTAAGCAACTTTGC-ATACGTTTCCCCACGGAGAAACCA 217139
Query 102208 CAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAA---- 102263
| ||||| || |||||| | |||||| || | || || || ||||| ||||
Sbjct 217138 GAGAAGTTCCGCACAAACACCACGCCAAAAGACACGTTTGGTGGTCAAAAGAGGAAGACG 217079
Query 102264 ATTCATTTTCTAAACTAAACCTAGACTGTGTTCCAAA 102300
||| ||| | ||||||||| | |||| ||||||
Sbjct 217078 ATT-ATTATGTAAACTAAATCGCATTTGTGCTCCAAA 217043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361249795523069
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |