Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq249 156 3e-33 >seq249 Length=322816 Score = 156 bits (172), Expect = 3e-33 Identities = 348/517 (67%), Gaps = 13/517 (3%) Strand=Plus/Minus Query 101792 GCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAA 101851 ||||| |||||||| ||||| | ||||||||| || | |||||||| |||||| Sbjct 217554 GCAATATTAAATGGAACTCCCAGTCCCATATCACAGGAGCGTTGATACAACATACAGGAT 217495 Query 101852 AGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTA 101911 | || |||| || ||||| |||||| ||| | ||||||||| || || ||||| Sbjct 217494 AACTCCCCATTACTTACATAGAATTGAGCTAACATATGACAAGGTGGTAAAGCCATTCGT 217435 Query 101912 GGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 | | | | |||||| ||| | | ||| |||||||| || ||||||||| Sbjct 217434 GATAAAGCCGCGGGATTCCATGCAGTGACAATCATTCTTCTATCATCTGGATTTGTTTTT 217375 Query 101972 ATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACA 102031 || || || | || ||||| | ||| || || |||| ||| | ||||| | | | Sbjct 217374 ATGGTCTCCACCACTTGTTTAATTTGATCCACCCCTTTTCCATCATAATTGGTTTTATAA 217315 Query 102032 CCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATC---T 102088 ||||||| || || || || || | ||| ||||||||||| ||||| |||||||| | Sbjct 217314 TCTTTATACTCCGCACCAAAGTGTCGCCATTGAAATCCATAGACAGGACCAAGATCCATT 217255 Query 102089 CCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCC 102148 |||||| | || | || ||| | | || || || | | ||| ||||| ||||| Sbjct 217254 TCTTCATAT---TCGTGTAATCCACGACTGTCCAAGAAGGCACGAGAGCCATTTCCATCC 217198 Query 102149 CAAATGTGCACGCCAGCTGCTGATAGC-TCTTTGCTGTCAGTAGATCCTCTGATAAACCA 102207 |||||||| || || | ||| |||||| | || || | || |||||| Sbjct 217197 CAAATGTGAACTCCTTTATCACTAAGCAACTTTGC-ATACGTTTCCCCACGGAGAAACCA 217139 Query 102208 CAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAA---- 102263 | ||||| || |||||| | |||||| || | || || || ||||| |||| Sbjct 217138 GAGAAGTTCCGCACAAACACCACGCCAAAAGACACGTTTGGTGGTCAAAAGAGGAAGACG 217079 Query 102264 ATTCATTTTCTAAACTAAACCTAGACTGTGTTCCAAA 102300 ||| ||| | ||||||||| | |||| |||||| Sbjct 217078 ATT-ATTATGTAAACTAAATCGCATTTGTGCTCCAAA 217043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249795523069