Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq22 176 5e-39 >seq22 Length=626277 Score = 176 bits (194), Expect = 5e-39 Identities = 1062/1666 (64%), Gaps = 72/1666 (4%) Strand=Plus/Plus Query 52839 TACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTT 52897 |||| | || ||||| ||||| |||||||| ||| | |||| ||| ||||||||| | Sbjct 346364 TACGCAAGTAATACATACCCGTCTTTAGACC-AGATTTCCATGTGTAGAAATGCATAGAT 346422 Query 52898 GTTAGTTTGGAAT--AACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 52955 || | | || | | | || | | | | | | ||| | | |||||| ||||| | Sbjct 346423 GTCAACT--GACTTGAGGTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAA 346480 Query 52956 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATA 53014 | | ||| | || || ||||| | || | ||| | ||| |||||||||| | | Sbjct 346481 CGTATTTTCCACGATCCGCTGCCATATCAATCAAA-TCTCTCTGTCGAATTTCCCAGACA 346539 Query 53015 GTTTTATAAACTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATAGATCCACCA 53071 |||||| | | ||||| ||| ||||| | ||| ||||||||| || ||| | Sbjct 346540 ACTTTATATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATTA 346599 Query 53072 TCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC--TC 53129 | | | |||||| ||| || ||||||||||| | | | | |||| | || Sbjct 346600 TATGCAATAATCTGATTTCGCATATCATCATTCCAAAGTC----CAAGTTTAATAAGATC 346655 Query 53130 --TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAAT 53187 ||| |||| | |||||| || | ||||| ||| | || | || ||||| Sbjct 346656 CATAACAAGATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAAT 346715 Query 53188 ATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 53247 ||| ||| | ||||| | | |||||||||| || | |||||||| ||||||||||| Sbjct 346716 ATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGT 346775 Query 53248 CGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG 53307 ||||| || |||| | |||| |||||| | ||| ||| | | || || || Sbjct 346776 TGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAAG 346835 Query 53308 AGGTTCCCAATTCCAAAGATCCGAC-----GGTACAACNNNNNNNNNNNNNNNTTGTAGA 53362 | ||||| ||||| | ||| || ||| ||||| Sbjct 346836 TGCATCCCAGTTCCACCG-TCC-ACTGCGTGGTTTTTTACCCCATAAATCAAATTGTAAT 346893 Query 53363 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 | ||| | | || | || ||| | || | || ||||||||||| | ||||| || Sbjct 346894 AAACCTTGAGAAGCAGGACTC-CCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAG 346952 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT-ATTTAGAT 53480 || || || || | ||| |||||||||| || || || || ||||| ||||| || Sbjct 346953 ATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTTAAAT 347011 Query 53481 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGA----GAATAAACGCGTCTGCTAAT 53536 ||| || | |||| ||||||| ||| | ||||||| ||||| | | Sbjct 347012 CTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAA----TCTGCCATT 347067 Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 ||||| ||||||||||||||||||| || | | ||||| | |||| ||| | Sbjct 347068 CCTTGTACACCAATACCGATAGGTCGATTACGCATATTACTGTCGCGTGCTTGTGGTAAC 347127 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656 ||||||||||| ||||| |||| | | || | ||||| | ||||| | || Sbjct 347128 GGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCA 347187 Query 53657 TTCAGTT-----TGAG-AAAATCAAATTGTCCATCT--ATTACAAACATGTTCAATGCAA 53708 | ||| ||| |||| || || | | || | || || | || || |||| Sbjct 347188 TATAGTCGTTGGTGATCAAAAACATTTTTTTCCTCATCAATAAAACGAGGT--AAAGCAA 347245 Query 53709 TAGATGCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCAG 53765 |||| || || ||||| || || | |||| ||| || | |||| || || || | Sbjct 347246 TAGAAGCAAGGTTACATACTGCAATTTCATCTTTAG-ATGAG--TATTCCATGATTTCTG 347302 Query 53766 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 53825 |||| | |||| ||||||||| || | |||| || || || || ||||| | Sbjct 347303 TGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACATG 347362 Query 53826 CATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCC 53885 |||| ||||| || || || || || ||||| || || ||||| | || || || Sbjct 347363 CATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAACC 347422 Query 53886 AGACGACACGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTATA 53943 | | | | || | ||| | ||| | | | | ||| |||| || || ||| Sbjct 347423 AAAGATCTTGTGCTTGAATTGTT--TTTACACCACGTCCTTCCTTTTCATAACGTTCATA 347480 Query 53944 CAA-TCGTTCAAACTCGTCTCCCCA-AACATTGTCC-AATCCAGGA-CATTCATCCGGAC 53999 || || || ||| || ||| ||| |||| | | ||||| || || | || ||| Sbjct 347481 TAACTCATT-AAATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGT-ATTTGGAT 347536 Query 54000 ACATCAACGACCACTC-TC-CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 54057 ||| | | ||||| || ||| | | ||| |||| ||| || | |||||||||||| Sbjct 347537 CCATAAGTGTCCACTTATCACGTTTTTC--CACACGTTCCATGAATAAATCAGGAATCCA 347594 Query 54058 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 54117 || || ||| || || | | | || || || ||||| |||||||| || || Sbjct 347595 CAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAGTAA 347654 Query 54118 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 |||||| | |||||| |||||| ||||| | || | | | | || || Sbjct 347655 GAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTGCG 347714 Query 54178 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 54237 ||| || || ||||||| || | ||| |||||||| | || | | ||| || | Sbjct 347715 TTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGTAC 347774 Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 || ||||| |||| ||||| || || | ||||| |||||| | ||||||||| Sbjct 347775 AAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTATG 347834 Query 54298 AA-TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 || ||| | ||| || || || ||||||||| ||| | || || |||| | |||| Sbjct 347835 AACATGA-ACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGTAT 347893 Query 54357 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 54416 |||| || ||||| |||||||| || ||| || || ||||| | |||||| Sbjct 347894 CATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTGTG 347953 Query 54417 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 | || || | ||||||||||| |||| || || ||||| Sbjct 347954 GGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAA 347999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719232535120