Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq244 95.1 1e-14 >seq244 Length=386007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || |||||||| ||||| |||||| || ||| ||| || Sbjct 42134 ATGCAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCCAGC 42193 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | || | ||| ||| ||| || || || ||| | ||| |||||| Sbjct 42194 GACACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAA 42253 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||||||||| || || || ||||| || | || |||| || ||||| Sbjct 42254 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTACAAC 42313 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || || || ||| ||||| | || | || ||||| Sbjct 42314 ATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGCCTCCGTGGAGG 42360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428334334709945