Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq244 140 3e-28 seq286 98.7 8e-16 >seq244 Length=386007 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| ||||||||||| |||||||| ||||||||| Sbjct 42360 CCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCC 42301 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| || || ||| | ||||| | ||| || ||| ||| Sbjct 42300 AGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 42241 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | ||||| || | || |||| Sbjct 42240 ATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACC 42181 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||| || || || || || || || ||||| Sbjct 42180 TCGAGGGCAATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| ||||||||||| |||||||| ||||||||| Sbjct 41531 CCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCC 41472 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 ||||| || | ||||||||||| || || ||| | ||||| | ||| || ||| Sbjct 41471 AGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCC 41418 >seq286 Length=961496 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||| || |||||||| |||||||| ||||||||| Sbjct 812618 CCTCCACGGAGGCGGAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCCGCC 812677 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 ||||| || | ||||||||||| || || ||| ||||||| | ||| || ||| Sbjct 812678 AGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAAATAAGACGCTGTTGATCC 812731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257558335404