Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq244 302 5e-77 >seq244 Length=386007 Score = 302 bits (334), Expect = 5e-77 Identities = 552/799 (69%), Gaps = 12/799 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||||||||||||||| ||| | || | || || || | |||| ||| Sbjct 100702 GAGCCACTGCTGCGCGAGAACCCAGACCGCTATGTCTTATTTCCTATCAAGTACCACGAC 100761 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGT-TCTGGACCGTCGAGGAGGTGGACCT 116694 | |||| | ||||| ||||||| | | || ||||||| || |||||| | || || Sbjct 100762 GTCTGGCAGAAATACAAGGAGGCCGA-GAGCAGTATCTGGACAGTGGAGGAGATTGATCT 100820 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | ||| || | | ||||||||| ||||||| || || || ||||||||||| Sbjct 100821 GGGCAATGATATGGTGGACTGGGAGAAGCTGAACGATGGGGAACGACACTTCATCAAGCA 100880 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| || || || ||||| || || ||||| || || ||||| ||| |||| || Sbjct 100881 CGTCCTTGCGTTCTTCGCTGCGAGTGACGGAATTGTGCTGGAGAACTTGGCACAGCGCTT 100940 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | |||||||||||| | || | ||| ||||||||||| || ||||||||||| || Sbjct 100941 CATGACAGAGGTGCAGGTGCCTGAAGTGCGCTGCTTCTACGGGTTCCAGATCGCCATTGA 101000 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 ||| |||||||| || | ||| || || | || |||||| | | | || || Sbjct 101001 GAATGTGCACTCCGAGACGTACTCAGTGCTGCTGGATACGTACATCACCGACTTGGTAGA 101060 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| ||| | || | |||||| ||||| || || || | ||||||| ||||| Sbjct 101061 GAAGGATCGTCTTCTGCATGCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGTG 101120 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 |||| | || ||||| | |||| | | | | |||| ||||| || || || ||||| Sbjct 101121 GGCGATCCGGTGGAT---CCGCAGTGCCGACTCGTTCGCAGAGCGTCTCGTTGCATTCGC 101177 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || || ||||| | ||||| || ||| ||| ||| | || ||||| ||||| || Sbjct 101178 CGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCTGCGCACTGTTCTGGCTGAAGAAGCG 101237 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 || || |||||||| ||||| |||||||||||||||||||| |||| ||||||||||| Sbjct 101238 TGGTCTGATGCCCGGACTGACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCA 101297 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATT---TGGTGCAGCGA-CCGAGCGCGGCGC 117230 | ||||||||| || | ||| || | | | || || | | | | || || Sbjct 101298 TACCGACTTTGCGTGCCTCTTGTATGAGAACTACATTGT-CAACAAGCTGCCAAAGGAGC 101356 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCG 117289 | || |||||| || ||| ||||| | ||||||| ||| ||| || ||| ||| Sbjct 101357 GAATCCATGAGATCATCCTCGAGGCGGTGGAGATCGAGC-GCGAGTTCATCTGCGATGCG 101415 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349 || || ||||| ||| | || | || | || ||| | |||||| || ||||| Sbjct 101416 CTTCCAGTGCGACTGATCGGGATGAACTCGGATCTCATGGCAACATACATTGAATTCGTG 101475 Query 117350 GCCGACAGGCTGCTGCTCG 117368 || ||| | |||||| ||| Sbjct 101476 GCGGACCGACTGCTGGTCG 101494 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | || ||||| ||||| || |||| || || |||| | Sbjct 42134 ATGCAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCCAGC 42193 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| || | | | |||| ||| |||| ||||| ||||| || ||| |||| || Sbjct 42194 GACACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAA 42253 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| || | |||||||| ||||||||| Sbjct 42254 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTACAAC 42313 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || ||||||||| |||||||||| || ||| | ||| Sbjct 42314 ATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGC 42349 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 40798 CCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857 ||| |||| || || || || |||| || || || |||||||| || | |||||||| Sbjct 41413 CCCCCGGATCAACAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTG 41472 Query 40858 AACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||| ||||||||| |||||||||| || ||| | ||| Sbjct 41473 GCGGACTACAACATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGC 41520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217145563440