Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12]
319 sequences; 29,822,211 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq244 302 5e-77
>seq244
Length=386007
Score = 302 bits (334), Expect = 5e-77
Identities = 552/799 (69%), Gaps = 12/799 (2%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| ||||||||||||||||| ||| | || | || || || | |||| |||
Sbjct 100702 GAGCCACTGCTGCGCGAGAACCCAGACCGCTATGTCTTATTTCCTATCAAGTACCACGAC 100761
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGT-TCTGGACCGTCGAGGAGGTGGACCT 116694
| |||| | ||||| ||||||| | | || ||||||| || |||||| | || ||
Sbjct 100762 GTCTGGCAGAAATACAAGGAGGCCGA-GAGCAGTATCTGGACAGTGGAGGAGATTGATCT 100820
Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754
| ||| || | | ||||||||| ||||||| || || || |||||||||||
Sbjct 100821 GGGCAATGATATGGTGGACTGGGAGAAGCTGAACGATGGGGAACGACACTTCATCAAGCA 100880
Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814
||| || || || ||||| || || ||||| || || ||||| ||| |||| ||
Sbjct 100881 CGTCCTTGCGTTCTTCGCTGCGAGTGACGGAATTGTGCTGGAGAACTTGGCACAGCGCTT 100940
Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874
| |||||||||||| | || | ||| ||||||||||| || ||||||||||| ||
Sbjct 100941 CATGACAGAGGTGCAGGTGCCTGAAGTGCGCTGCTTCTACGGGTTCCAGATCGCCATTGA 101000
Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934
||| |||||||| || | ||| || || | || |||||| | | | || ||
Sbjct 101001 GAATGTGCACTCCGAGACGTACTCAGTGCTGCTGGATACGTACATCACCGACTTGGTAGA 101060
Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994
|||| ||| | || | |||||| ||||| || || || | ||||||| |||||
Sbjct 101061 GAAGGATCGTCTTCTGCATGCCATCTCAACGATTCCATGTATCCAGAAGAAGGCGGAGTG 101120
Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054
|||| | || ||||| | |||| | | | | |||| ||||| || || || |||||
Sbjct 101121 GGCGATCCGGTGGAT---CCGCAGTGCCGACTCGTTCGCAGAGCGTCTCGTTGCATTCGC 101177
Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114
|| || ||||| | ||||| || ||| ||| ||| | || ||||| ||||| ||
Sbjct 101178 CGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCTGCGCACTGTTCTGGCTGAAGAAGCG 101237
Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174
|| || |||||||| ||||| |||||||||||||||||||| |||| |||||||||||
Sbjct 101238 TGGTCTGATGCCCGGACTGACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCA 101297
Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATT---TGGTGCAGCGA-CCGAGCGCGGCGC 117230
| ||||||||| || | ||| || | | | || || | | | | || ||
Sbjct 101298 TACCGACTTTGCGTGCCTCTTGTATGAGAACTACATTGT-CAACAAGCTGCCAAAGGAGC 101356
Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG-CTTCCTCACCGAAGCG 117289
| || |||||| || ||| ||||| | ||||||| ||| ||| || ||| |||
Sbjct 101357 GAATCCATGAGATCATCCTCGAGGCGGTGGAGATCGAGC-GCGAGTTCATCTGCGATGCG 101415
Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349
|| || ||||| ||| | || | || | || ||| | |||||| || |||||
Sbjct 101416 CTTCCAGTGCGACTGATCGGGATGAACTCGGATCTCATGGCAACATACATTGAATTCGTG 101475
Query 117350 GCCGACAGGCTGCTGCTCG 117368
|| ||| | |||||| |||
Sbjct 101476 GCGGACCGACTGCTGGTCG 101494
Score = 138 bits (152), Expect = 1e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || |||||||| || | || ||||| ||||| || |||| || || |||| |
Sbjct 42134 ATGCAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCCAGC 42193
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| || | | | |||| ||| |||| ||||| ||||| || ||| |||| ||
Sbjct 42194 GACACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAA 42253
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || || || |||||||| || | |||||||| |||||||||
Sbjct 42254 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTACAAC 42313
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|| ||||||||| |||||||||| || ||| | |||
Sbjct 42314 ATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGC 42349
Score = 82.4 bits (90), Expect = 8e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 40798 CCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857
||| |||| || || || || |||| || || || |||||||| || | ||||||||
Sbjct 41413 CCCCCGGATCAACAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTG 41472
Query 40858 AACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||| ||||||||| |||||||||| || ||| | |||
Sbjct 41473 GCGGACTACAACATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCCGC 41520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217145563440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |