Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq249 165 6e-36 >seq249 Length=322816 Score = 165 bits (182), Expect = 6e-36 Identities = 270/389 (69%), Gaps = 0/389 (0%) Strand=Plus/Minus Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 ||||||| | ||| ||||| ||||| || || || |||||||||||| || | | Sbjct 217572 GTTAATAACGCATAAGAGGCAATATTAAATGGAACTCCCAGTCCCATATCACAGGAGCGT 217513 Query 97198 TGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAG 97257 ||||| ||| |||||| | || |||| || ||||| || ||| || | |||||| Sbjct 217512 TGATACAACATACAGGATAACTCCCCATTACTTACATAGAATTGAGCTAACATATGACAA 217453 Query 97258 GGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTA 97317 || || || |||||| || | | | | |||||| ||| | | |||||||||| Sbjct 217452 GGTGGTAAAGCCATTCGTGATAAAGCCGCGGGATTCCATGCAGTGACAATCATTCTTCTA 217393 Query 97318 TCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCA 97377 || ||| ||||| | |||||| | | | || || | |||||| || |||| |||| Sbjct 217392 TCATCTGGATTTGTTTTTATGGTCTCCACCACTTGTTTAATTTGATCCACCCCTTTTCCA 217333 Query 97378 CCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAA 97437 |||||||| ||| | ||| ||| || || ||||| || | |||||| |||||||| Sbjct 217332 TCATAATTGGTTTTATAATCTTTATACTCCGCACCAAAGTGTCGCCATTGAAATCCATAG 217273 Query 97438 ACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTA 97497 ||||| ||||| || |||||| || || ||| | | || || ||| | | Sbjct 217272 ACAGGACCAAGATCCATTTCTTCATATTCGTGTAATCCACGACTGTCCAAGAAGGCACGA 217213 Query 97498 GATCCATTTGCATCCCAAATGTGCACACC 97526 || |||||| ||||||||||||| || || Sbjct 217212 GAGCCATTTCCATCCCAAATGTGAACTCC 217184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346782651768830