Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq244 118 9e-22 >seq244 Length=386007 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | | | ||||| ||| | || ||||| || ||||||||||| || Sbjct 42361 ACCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGC 42302 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| ||||| ||||| || ||||| |||| |||||||| ||||| || || Sbjct 42301 CAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGG 42242 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| ||| ||| || || | || || ||||| || ||| || Sbjct 42241 AATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCAC 42182 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || ||||| |||| || ||||| || |||||||| Sbjct 42181 CTCGAGGGCAATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 238/353 (67%), Gaps = 20/353 (6%) Strand=Plus/Plus Query 44940 TGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCA 44999 ||||||||||||||||||| |||||||| | || ||| | || || |||||||| ||| Sbjct 101243 TGATGCCCGGACTGACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCATACCG 101302 Query 45000 ACTTTGCCTGCCTCTACTAT-AATACGAGAGTCGATCAA-AAGTTG---GACGCGCCCAC 45054 ||||||| ||||||| ||| | || | | | |||| ||| || | | || | Sbjct 101303 ACTTTGCGTGCCTCTTGTATGAGAACTACATT--GTCAACAAGCTGCCAAAGGAGCGAA- 101359 Query 45055 CGTCAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATT-TTTTGCTGAGGCTC 45113 || | || || || ||| || |||| |||||| || || | ||| || || | Sbjct 101360 --TCCATGAGATCATCCTCGAGGCGGTGGAGATCGAGCGCGAGTTCATCTGC-GATGCGC 101416 Query 45114 TGCCCGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCG 45173 | || | || | || |||||| || || | ||| || |||||||| || || | Sbjct 101417 TTCCAGTGCGACTGATCGGGATGAACTCGGATCTCATGGCAACATACATTGAATTCGTGG 101476 Query 45174 CCGATCGTCTTCTCGTC-CAGTT---AAAGTATCCCAAGATGTACTATACTGAGAACCCA 45229 | || || || || ||| || || || | | | | || ||| | | |||| || Sbjct 101477 CGGACCGACTGCTGGTCGCACTTGGCAACGAA---CGACAT-TACAAATCAAAGAATCCG 101532 Query 45230 TTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAA 45282 || || |||||| | | ||||||||| ||||||| || || || |||||||| Sbjct 101533 TTTGACTTTATGGAGATGATTTCGTTGCAGGGCAAGACGAACTTCTTTGAGAA 101585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828713348748