Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq249 149 5e-31 >seq249 Length=322816 Score = 149 bits (164), Expect = 5e-31 Identities = 324/485 (67%), Gaps = 0/485 (0%) Strand=Plus/Plus Query 20140 GAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGA 20199 || ||||||||| | |||||| | | |||| ||| || || |||| |||| Sbjct 217178 GATAAAGGAGTTCACATTTGGGATGGAAATGGCTCTCGTGCCTTCTTGGACAGTCGTGGA 217237 Query 20200 TTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTT 20259 || || | | |||| |||| | |||||||| ||||||||||||||| |||| ||| Sbjct 217238 TTACACGAATATGAAGAAATGGATCTTGGTCCTGTCTATGGATTTCAATGGCGACACTTT 217297 Query 20260 GGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAA 20319 || || || ||| || || || |||||| |||| |||| || |||||| | || Sbjct 217298 GGTGCGGAGTATAAAGATTATAAAACCAATTATGATGGAAAAGGGGTGGATCAAATTAAA 217357 Query 20320 AATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGG 20379 | || | | || ||||| || ||| | || |||||||| ||| | || ||| Sbjct 217358 CAAGTGGTGGAGACCATAAAAACAAATCCAGATGATAGAAGAATGATTGTCACTGCATGG 217417 Query 20380 AACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTAC 20439 || | | | | | ||||||||| || || ||||||||| || ||||| || Sbjct 217418 AATCCCGCGGCTTTATCACGAATGGCTTTACCACCTTGTCATATGTTAGCTCAATTCTAT 217477 Query 20440 GTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGT 20499 || |||| || || || ||| |||||||||| ||| ||||||||||||||| Sbjct 217478 GTAAGTAATGGGGAGTTATCCTGTATGTTGTATCAACGCTCCTGTGATATGGGACTGGGA 217537 Query 20500 GTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGAT 20559 ||||| || |||||||| ||||||| | | || | ||||||| | | |||| Sbjct 217538 GTTCCATTTAATATTGCCTCTTATGCGTTATTAACAATTCTGATTGCGAAGGCAACAGGA 217597 Query 20560 TTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATA 20619 | ||| | || || | || ||||| | || || || ||| | || |||||| | Sbjct 217598 CTGAAACCAGGGGAACTCGTTCACACACTTGGGGATGCACATGTGTATAAGAATCATGTG 217657 Query 20620 GAACC 20624 ||||| Sbjct 217658 GAACC 217662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399182448047455