Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq244 293 2e-74 >seq244 Length=386007 Score = 293 bits (324), Expect = 2e-74 Identities = 528/762 (69%), Gaps = 16/762 (2%) Strand=Plus/Plus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 || || || ||||| | ||||| ||||| || || || ||||| ||||| ||| Sbjct 100870 TTCATCAAGCACGTCCTTGCGTTCTTCGCTGCGAGTGACGGAATTGTGCTGGAGAACTTG 100929 Query 57738 GTCGAAAGATTT-TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 | | | || | ||| || ||||| ||| | || | | | ||||| ||||| || || Sbjct 100930 GCACAGCGCTTCATGACA-GAGGTGCAGGTGCCTGAAGTGCGCTGCTTCTACGGGTTCCA 100988 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | |||||||| || ||||| || || | ||| || | || | ||||||||| | | Sbjct 100989 GATCGCCATTGAGAATGTGCACTCCGAGACGTACTCAGTGCTGCTGGATACGTACATCAC 101048 Query 57857 GGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAA 57916 ||| | ||||| | | || | | || ||| ||| || || ||| || Sbjct 101049 CGACTTGGTAGAGAAGGATCGTCTTCTGCATGCCATCTCAACGATTCCATGTATCCAGAA 101108 Query 57917 GAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCT 57976 |||||| |||||| | ||| ||||| || ||| | | ||||||| ||| | || Sbjct 101109 GAAGGCGGAGTGGGCGATCCGGTGGATCCGCAGTGCC---GACTCGTTCGCAGAGCGTCT 101165 Query 57977 AATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTT 58035 | || |||||||| || || ||||||||||| || ||| || ||| ||| | || | Sbjct 101166 CGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCTGC-GCACTGTTCT 101224 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || ||||||| || || ||||||||||| |||||||| ||||||||| | || ||||| | Sbjct 101225 GGCTGAAGAAGCGTGGTCTGATGCCCGGACTGACGTTCAGCAACGAGCTCATCTCGCGGG 101284 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTA----CTCTCACATTGTCAATAAA 58151 | |||||||| ||||| || ||||||||||| |||| || |||||||||| || Sbjct 101285 ATGAGGGTCTGCATACCGACTTTGCGTGCCTCTTGTATGAGAACT-ACATTGTCAACAAG 101343 Query 58152 CCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 | | | ||| || ||| || || ||| ||||||||| | |||||| ||||| Sbjct 101344 CTGCCAAAGGAGCGAATCCATGAGATCATCCTCGAGGCGGTGGAGATCGAGCGCGAGTTC 101403 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 || ||| || || || ||| || |||| |||||| ||| | ||| ||| ||| Sbjct 101404 ATCTGCGATGCGCTTCCAGTGCGACTGATCGGGATGAACTCGGATCTCATGGCAACATAC 101463 Query 58272 ATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA--GAGCGTCATTACAACA 58329 ||||| || || || ||| |||| || ||| ||| | | | || || |||||||| Sbjct 101464 ATTGAATTCGTGGCGGACCGACTGCTGGTCGCACT--TGGCAACGAACGACATTACAAAT 101521 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | || ||||||||||| |||||| | |||| ||| | |||||||||| ||||| || | Sbjct 101522 CAAAGAATCCGTTTGACTTTATGGAGATGATTTCGTTGCAGGGCAAGACGAACTTCTTTG 101581 Query 58390 aaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCG 58431 | || || ||| | || || || || ||||||||||||| Sbjct 101582 AGAAGAAGGTTGGTGAGTACCAGAAGGCGGGCGTGATGAGCG 101623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764622506480