Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq249 136 8e-27 seq22 91.5 3e-13 >seq249 Length=322816 Score = 136 bits (150), Expect = 8e-27 Identities = 257/373 (69%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 35330 CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGA 35389 ||||| ||| | | ||||| || || | || ||||||||| | || ||| |||| Sbjct 217190 CACATTTGGGATGGAAATGGCTCTCGTGCCTTCTTGGACAGTCGTGGATTACACGAATAT 217249 Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT 35449 | ||| ||| | || || || || ||||| |||||||| || |||||||| || ||| Sbjct 217250 GAAGAAATGGATCTTGGTCCTGTCTATGGATTTCAATGGCGACACTTTGGTGCGGAGTAT 217309 Query 35450 GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAA-TTGGCCAATATACTAAA 35508 | | | || ||||| |||||| || | |||||| || ||| | | | Sbjct 217310 AAAGATTATAAAACCAATTATGATGGAAAAGGGGTGGATCAAATTAAACAAG-TGGTGGA 217368 Query 35509 GACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGA 35568 |||| | | | |||||||||||||||||| |||||| | || ||||||||||| || Sbjct 217369 GACCATAAAAACAAATCCAGATGATAGAAGAATGATTGTCACTGCATGGAATCCCGCGGC 217428 Query 35569 TCT-TCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATG 35627 | | ||| | |||||| | || || || || ||| |||||||| ||||| ||||| Sbjct 217429 TTTATCA-CGAATGGCTTTACCACCTTGTCATATGTTAGCTCAATTCTATGTAAGTAATG 217487 Query 35628 GAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCA 35687 | || || || || ||||||||| || | | ||| | || |||| || || || | Sbjct 217488 GGGAGTTATCCTGTATGTTGTATCAACGCTCCTGTGATATGGGACTGGGAGTTCCATTTA 217547 Query 35688 ATATTGCATCATA 35700 ||||||| || || Sbjct 217548 ATATTGCCTCTTA 217560 >seq22 Length=626277 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 94825 TTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAG 94884 ||||| ||||||||||| |||||||| ||||| ||||| | | | |||||| || || Sbjct 347884 TTAAGTGTATCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAA 347943 Query 94885 GAAAGTTG-GGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATA 94943 | ||| |||| || ||| ||| | ||||| | || || | ||||| |||||| | Sbjct 347944 CTCATTTGTGGGTATG-GTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAAAAA 348002 Query 94944 GTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCC 95003 | ||||| | |||||||||||| | ||| ||| | ||| ||| ||||| || Sbjct 348003 TCCCAGAGACATTAAATCATATGTTTCCTTTACACGTTTCAAATCTTCTCCATGAATACC 348062 Query 95004 GACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 | ||| || || | || ||| | || || ||||| || Sbjct 348063 TAAAGCTACCCGAAGAAACATATGTTGTGGACGCTCTAC 348101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579955384645