Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq22 156 5e-33 >seq22 Length=626277 Score = 156 bits (172), Expect = 5e-33 Identities = 1059/1668 (63%), Gaps = 76/1668 (5%) Strand=Plus/Plus Query 62077 TACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTC 62135 |||| | || ||||| ||||| |||||||| ||| | |||| ||| ||||||||| Sbjct 346364 TACGCAAGTAATACATACCCGTCTTTAGACC-AGATTTCCATGTGTAGAAATGCATAGAT 346422 Query 62136 GTTAGTTTGGAAT--AACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 62193 || | | || | | | || | | | | | | ||| | | |||||| ||||| | Sbjct 346423 GTCAACT--GACTTGAGGTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAA 346480 Query 62194 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGCAATTTCCCAAATA 62252 | | ||| | || || ||||| | || | ||| | ||| ||||||||| | | Sbjct 346481 CGTATTTTCCACGATCCGCTGCCATATCAATCAAA-TCTCTCTGTCGAATTTCCCAGACA 346539 Query 62253 GTTTTATAAACTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCA 62309 |||||| | | ||||| ||| ||||| | ||| ||||||||| || ||| | Sbjct 346540 ACTTTATATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATTA 346599 Query 62310 TCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC--TC 62367 | | | |||||| ||| || ||||||||||| | | | | |||| | || Sbjct 346600 TATGCAATAATCTGATTTCGCATATCATCATTCCAAAGTC----CAAGTTTAATAAGATC 346655 Query 62368 --TAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAAT 62425 ||| |||| | ||||| || ||||||| ||| | || | || ||||| Sbjct 346656 CATAACAAGATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAAT 346715 Query 62426 ATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 62485 ||| ||| | ||||| | |||||||||| || | |||||||| ||||||||||| Sbjct 346716 ATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGT 346775 Query 62486 CGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG 62545 ||||| || |||| | |||| |||||| | ||| ||| | | || || || Sbjct 346776 TGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAAG 346835 Query 62546 ATGTTCCCAATTCCAAAGATCCGAC-----GGTACAACANNNNNNNNNNNATATTGTAGA 62600 ||||| ||||| | ||| || ||| | | |||||| Sbjct 346836 TGCATCCCAGTTCCACCG-TCC-ACTGCGTGGTTTTTTACCCCATAAATCAAATTGTAAT 346893 Query 62601 ATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659 | ||| | | || | || ||| | || | |||||||||||||| | ||||| || Sbjct 346894 AAACCTTGAGAAGCAGGACTC-CCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAG 346952 Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT-ATTTAGAT 62718 | || || || | ||| |||||||||| || ||||| || ||||| ||||| || Sbjct 346953 ATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTTAAAT 347011 Query 62719 CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGA----GAATAAACGCGTCCGCTAAT 62774 ||| || | |||| ||||||| ||| | ||||||| || || | | Sbjct 347012 CTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAA----TCTGCCATT 347067 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 ||||| ||||||||||||||||||| || | | ||||| | |||| ||| | Sbjct 347068 CCTTGTACACCAATACCGATAGGTCGATTACGCATATTACTGTCGCGTGCTTGTGGTAAC 347127 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||||||||| ||||| |||| | | || | |||||| | ||||| | || Sbjct 347128 GGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCA 347187 Query 62895 TTCAGTTTGAGAAAATCAAA---------TCGCCCATCTATTACAAACATGTTCAATGCA 62945 | ||| | |||||| | | |||| || | ||| | | || ||| Sbjct 347188 TATAGTCGTTGGTGATCAAAAACATTTTTTTCCTCATCAATAA--AACGAGGTAAA-GCA 347244 Query 62946 ACAGATGCCAGATTACACACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCA 63002 | ||| || || ||||| || || | |||| ||| || | |||| || || || Sbjct 347245 ATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAG-ATGAG--TATTCCATGATTTCT 347301 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| | |||| ||||||||| || | |||| || || || || ||||| Sbjct 347302 GTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACAT 347361 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 ||||| ||||| || || || ||| || ||||| || || ||||| | || || | Sbjct 347362 GCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAAC 347421 Query 63123 CAGACGACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGAGTA 63179 || | || | || | ||| | ||| | | ||||| || |||| || | | Sbjct 347422 CAAAGATCTTGTGCTTGAATTGTT--TTTACACCACGTCCTTCCT-TTTCATAACGTTCA 347478 Query 63180 TACAA-TCGTTCGAACTCGTCTCCCCA-AACATTGTCC-AATCTAGGA-CATTCATCCGG 63235 || || || || || || ||| ||| |||| | | |||| || || | || || Sbjct 347479 TATAACTCATTA-AATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGT-ATTTGG 347534 Query 63236 ACACATCAACGACCACTC-TC-CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 | ||| | | ||||| || ||| | | ||| |||| ||| || | |||||||||| Sbjct 347535 ATCCATAAGTGTCCACTTATCACGTTTTTC--CACACGTTCCATGAATAAATCAGGAATC 347592 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || ||| || || | || | || || || ||||| |||||||| || || Sbjct 347593 CACAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAGT 347652 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 |||||| | |||||| |||||| ||||| | || | || | | || Sbjct 347653 AAGAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTG 347712 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 ||||| || || ||||||| || | ||| |||||||| | || | | ||| || Sbjct 347713 CGTTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGT 347772 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | || || |||||| | ||||| || || | ||||| | |||| | ||||||||| Sbjct 347773 ACAAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTA 347832 Query 63534 CTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 || ||| | ||| || || || ||||||||| ||| | || || |||| | || Sbjct 347833 TGAACATGA-ACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGT 347891 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 ||||| || || || || ||||| || ||| || || ||||| | |||||| Sbjct 347892 ATCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTG 347951 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | | || || | ||||||||||| |||| || || ||||| Sbjct 347952 TGGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAA 347999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815088602320