Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq22 197 1e-45 >seq22 Length=626277 Score = 197 bits (218), Expect = 1e-45 Identities = 905/1409 (64%), Gaps = 45/1409 (3%) Strand=Plus/Plus Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||| |||||| |||| | ||||||| |||||||||||| | ||||||||||| || Sbjct 346710 ATAAATATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGA 346769 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 |||||| |||||||| || | || | |||||||| ||| || |||| | | Sbjct 346770 TGCAGTTGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTC 346829 Query 37290 TTTTAGTTCATTCCAATCCCA---TAAATCTGTTGGGTTCTTTAACC-ACATATCATATT 37345 || ||| ||| ||| | ||| | | ||| |||| |||| || | | |||| ||| Sbjct 346830 CTTAAGTGCATCCCAGTTCCACCGTCCA-CTGCGTGGTTTTTTACCCCATAAATCAAATT 346888 Query 37346 GTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAG 37405 ||| | ||||| | || ||| | | | || | ||||| ||||| | || || Sbjct 346889 GTAATAAACCTTGAGAAGCAGGACTCCCTTGAAATCTTTCATATGGTCCTTCTTCTTCAG 346948 Query 37406 CTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTA 37465 | || ||| |||| ||| | |||||| ||||| ||||| || ||||||| | ||||| Sbjct 346949 CAAGATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAATTTCTTCATTTA 347008 Query 37466 ATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAAC 37525 | ||| || | |||| |||| | | | | | | || | ||| |||| | Sbjct 347009 AATCTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAATCTGCCATTC 347068 Query 37526 CCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA-TCTAGACGATTCTATCACT 37584 | || ||||| ||||| || |||| || | ||||| || | | || | | Sbjct 347069 CTTGTACACCAATACCGATAGGTCGATTACGCATATTACTGTCGCGT-GCTTGTGGTAAC 347127 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATT--- 37641 ||||||||||| ||||| || | | | || | |||| | | | ||| || ||| Sbjct 347128 GGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCA 347187 Query 37642 -ATTCTCAACTTGTCGAACATAAATACGTTATT----ATTAACAAATTTACTCAACGAAA 37696 || || ||| || || ||| | || || || || ||| | || | || Sbjct 347188 TATAGTCG--TTGGTGATCAAAAACATTTTTTTCCTCATCAATAAAACGAGGTAAAGCAA 347245 Query 37697 TAGATCCTAGATTACATACAGCAACTTCATCTTCG--TTACTAAATTGTATAATCTCTGT 37754 |||| | || |||||||| |||| |||||||| | | || || || || ||||| Sbjct 347246 TAGAAGCAAGGTTACATACTGCAATTTCATCTTTAGATGAGTA--TTCCATGATTTCTGT 347303 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 || | |||| | | ||| || | || | || || ||||| |||||||| | Sbjct 347304 GCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACATGC 347363 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 ||||||||| || ||| | || |||| ||| ||||| | || | |||| ||| Sbjct 347364 ATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAACCA 347423 Query 37875 TAAACTTCTTGCTTTAACGATCGCTTTA----AtttttttCTTTGTTTCGTATTCTATAT 37930 | | | ||||| || | |||| | | ||| || ||| || | || Sbjct 347424 AAGATCTTGTGCTTGAATTGTT--TTTACACCACGTCCTTCCTT--TTCATAACGTTCAT 347479 Query 37931 ATAATTTGTTAAAATCATTCCCCCATA-CA-TCGCATAATCCTGGA-CATTCGCATGGAC 37987 |||| | ||||| || | | ||||| || || | ||||||||| || | |||| Sbjct 347480 ATAACTCATTAAATTCCT--CACCATAACAGTCACTTAATCCTGGTGCAGTATT-TGGAT 347536 Query 37988 ACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATA 38047 ||| || | ||| | ||| |||||| || |||||||| ||||||||||| | ||| | Sbjct 347537 CCATAAGTGTCCACTTATCACGTTTTTCCACACGTTCCATGAATAAATCAGGAATCCACA 347596 Query 38048 ATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTA 38107 ||| ||| | || | | | ||||| || || |||||| ||| || | | Sbjct 347597 GGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTT-CTTTAG-TAA 347654 Query 38108 GA--AAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 || || | || ||||| | ||||| ||||| | ||||| | | || || | Sbjct 347655 GAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTGCG 347714 Query 38166 TTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTAC 38225 |||| |||| || |||| | ||| | | |||||||||| | | | | ||| ||||| Sbjct 347715 TTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGTAC 347774 Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285 | ||||| ||| | || || | || | |||||| | || || || |||||| | Sbjct 347775 AAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTA-T 347833 Query 38286 TATCGACAAT-CCTATTCCACCTGCATGTTT--TGATATTAAAGCGCATTGTTTTAACGT 38342 | | || || || ||||| || ||| ||||| || || || ||||| | || Sbjct 347834 GAACATGAACACCAATACCACCAGCCATTTTACTGATAATA--GCACACTGTTTAAGTGT 347891 Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTG 38402 |||| | || || || ||||| || || | |||| | | ||||| | |||||| Sbjct 347892 ATCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTG 347951 Query 38403 AGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGA 38462 || |||| || || | ||||||||| || |||| |||||| | || || || Sbjct 347952 TGGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAAAAATCCCAGAGA 348011 Query 38463 CAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATAC 38522 || ||| ||||||||| ||||| | | ||| | || |||||||||| || ||| Sbjct 348012 CATTAAATCATATGTTTCCTTTACACGTTTCAAATCTTCTCCATGAATACCTAAAGCTAC 348071 Query 38523 CCTCATTAGCATATGTTGTGGTCTTTCTA 38551 || | | |||||||||||| | |||| Sbjct 348072 CCGAAGAAACATATGTTGTGGACGCTCTA 348100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522931757360