Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq22 183 4e-41 >seq22 Length=626277 Score = 183 bits (202), Expect = 4e-41 Identities = 1063/1667 (64%), Gaps = 74/1667 (4%) Strand=Plus/Plus Query 64870 TACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTC 64928 |||| | || ||||| ||||| |||||||| ||| | |||| ||| ||||||||| Sbjct 346364 TACGCAAGTAATACATACCCGTCTTTAGACC-AGATTTCCATGTGTAGAAATGCATAGAT 346422 Query 64929 GTTAGTTTGGAAT--AACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 64986 || | | || | | | || | | | | | | ||| | | |||||| ||||| | Sbjct 346423 GTCAACT--GACTTGAGGTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAA 346480 Query 64987 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATA 65045 | | ||| | || || ||||| | || | ||| | ||| |||||||||| | | Sbjct 346481 CGTATTTTCCACGATCCGCTGCCATATCAATCAAA-TCTCTCTGTCGAATTTCCCAGACA 346539 Query 65046 GTTTTATAAACTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCA 65102 |||||| | | ||||| ||| ||||| | ||| ||||||||| || ||| | Sbjct 346540 ACTTTATATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATTA 346599 Query 65103 TCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC--TC 65160 | ||| |||||| ||| || ||||||||||| | | | | |||| | || Sbjct 346600 TATGCAATAATCTGATTTCGCATATCATCATTCCAAAGTC----CAAGTTTAATAAGATC 346655 Query 65161 --TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAAT 65218 ||| |||| | |||||| || | ||||| ||| | || | || ||||| Sbjct 346656 CATAACAAGATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAAT 346715 Query 65219 ATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 65278 ||| ||| | ||||| | | |||||||||| || | |||||||| ||||||||||| Sbjct 346716 ATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGT 346775 Query 65279 CGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG 65338 ||||| || |||| | |||| |||||| | ||| ||| | | || || || Sbjct 346776 TGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAAG 346835 Query 65339 AGGTTCCCAATTCCAAAGATCCGAC-----GGTACAACNNNNNNNNNNNNNNNTTGTAGA 65393 | ||||| ||||| | ||| || ||| ||||| Sbjct 346836 TGCATCCCAGTTCCACCG-TCC-ACTGCGTGGTTTTTTACCCCATAAATCAAATTGTAAT 346893 Query 65394 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 | ||| | | || | || ||| | || | || ||||||||||| | ||||| || Sbjct 346894 AAACCTTGAGAAGCAGGACTC-CCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAG 346952 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT-ATTTAGAT 65511 || || || || | ||| |||||||||| || || || || ||||| ||||| || Sbjct 346953 ATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTTAAAT 347011 Query 65512 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGA----GAATAAACGCGTCTGCTAAT 65567 ||| || | |||| ||||||| ||| | ||||||| ||||| | | Sbjct 347012 CTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAA----TCTGCCATT 347067 Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 ||||| ||||||||||||||||||| || | | ||||| | |||| ||| | Sbjct 347068 CCTTGTACACCAATACCGATAGGTCGATTACGCATATTACTGTCGCGTGCTTGTGGTAAC 347127 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 ||||||||||| ||||| |||| | | || | |||||| | ||||| | || Sbjct 347128 GGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCA 347187 Query 65688 TTCAGTTTGAGAAAATCAAA---------TCGCTCATCTATTACAAACATGTTCAATGCA 65738 | ||| | |||||| | |||||| || | ||| | | || ||| Sbjct 347188 TATAGTCGTTGGTGATCAAAAACATTTTTTTCCTCATCAATAA--AACGAGGTAAA-GCA 347244 Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCA 65795 | ||| || || ||||| || || | |||| ||| || | |||| || || || Sbjct 347245 ATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAG-ATGAG--TATTCCATGATTTCT 347301 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 ||||| | |||| ||||||||| || | |||| || || || || ||||| Sbjct 347302 GTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACAT 347361 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 ||||| ||||| || || || ||| || ||||| || || ||||| | || || | Sbjct 347362 GCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAAC 347421 Query 65916 CAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTAT 65973 || | || | || | ||| | ||| | | | | ||| |||| || || || Sbjct 347422 CAAAGATCTTGTGCTTGAATTGTT--TTTACACCACGTCCTTCCTTTTCATAACGTTCAT 347479 Query 65974 ACAA-TCGTTCGAACTCGTCTCCCCA-AACATTGTCC-AATCCAGGA-CATTCATCCGGA 66029 | || || || || || ||| ||| |||| | | ||||| || || | || ||| Sbjct 347480 ATAACTCATTA-AATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGT-ATTTGGA 347535 Query 66030 CACATCAACGACCACTC-TC-CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 ||| | | ||||| || ||| | | ||| |||| ||| || | ||||||||||| Sbjct 347536 TCCATAAGTGTCCACTTATCACGTTTTTC--CACACGTTCCATGAATAAATCAGGAATCC 347593 Query 66088 AAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 66147 | || || ||| | || | | | || || || ||||| |||||||| || || Sbjct 347594 ACAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAGTA 347653 Query 66148 CGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 66207 |||||| | |||||| |||||| ||||| | || | || | | || | Sbjct 347654 AGAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTGC 347713 Query 66208 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 66267 |||| || || ||||||| || | ||| |||||||| | || | | ||| || | Sbjct 347714 GTTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGTA 347773 Query 66268 TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTAC 66327 || ||||| ||||| ||||| || || | ||||| |||||| | ||||||||| Sbjct 347774 CAAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTAT 347833 Query 66328 TAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 66386 || ||| | ||| || || || ||||||||| ||| | || || |||| | ||| Sbjct 347834 GAACATGA-ACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGTA 347892 Query 66387 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 66446 ||||| || ||||| |||||||| || ||| || || ||||| | |||||| Sbjct 347893 TCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTGT 347952 Query 66447 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 | || || | ||||||||||| |||| || || ||||| Sbjct 347953 GGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAA 347999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170175535960