Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq22 181 2e-40 seq244 122 1e-22 >seq22 Length=626277 Score = 181 bits (200), Expect = 2e-40 Identities = 1067/1669 (64%), Gaps = 78/1669 (5%) Strand=Plus/Plus Query 78749 TACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAGAAATGCATACTC 78807 |||| | || ||||| ||||| |||||||| ||| | |||| ||||||||||||| Sbjct 346364 TACGCAAGTAATACATACCCGTCTTTAGACC-AGATTTCCATGTGTAGAAATGCATAGAT 346422 Query 78808 GTTAGTTTGGAAT--AACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 78865 || | | || | | | || | | | | | | ||| | | |||||| ||||| | Sbjct 346423 GTCAACT--GACTTGAGGTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAA 346480 Query 78866 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATA 78924 | | ||| | || || ||||| | || | ||| | ||| |||||||||| | | Sbjct 346481 CGTATTTTCCACGATCCGCTGCCATATCAATCAAA-TCTCTCTGTCGAATTTCCCAGACA 346539 Query 78925 GTTTTATAAACTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCA 78981 |||||| | | ||||| ||| ||||| | ||| ||||||||| || ||| | Sbjct 346540 ACTTTATATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATTA 346599 Query 78982 TCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAAC--TC 79039 | ||| |||||| ||| || || |||||||| | | | | |||| | || Sbjct 346600 TATGCAATAATCTGATTTCGCATATCATCATTCCAAAGTC----CAAGTTTAATAAGATC 346655 Query 79040 --TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAAT 79097 ||| |||| | |||||| || | ||||| ||| | || | || ||||| Sbjct 346656 CATAACAAGATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAAT 346715 Query 79098 ATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGT 79157 ||| ||| | ||||| | | |||||||| || | |||||||| |||||||| || Sbjct 346716 ATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGT 346775 Query 79158 TGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAG 79217 |||||| || |||| | |||| |||||| | ||| | | | | || || || Sbjct 346776 TGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAAG 346835 Query 79218 AGATTCCCAATCCCAAAGATCAGACGGGACAACATT---CCAAAGATCATATTGTAGAAT 79274 | ||||| | ||| | || | || ||| | |||| |||||| | Sbjct 346836 TGCATCCCAGTTCCACCGTCCACTGCGTGGTTTTTTACCCCATAAATCAAATTGTAATAA 346895 Query 79275 ACCGTTACTAGCGTATGA-TCCTGTGTA-TGTTTCATAAGGTCCTTCCTTTTCGGCTAAT 79332 ||| | | ||| | || ||| || | | ||||||| |||||||| | ||| || | Sbjct 346896 ACCTTGAGAAGC--AGGACTCCCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAGA 346953 Query 79333 TCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTT-ATTGAGATC 79391 || || || || | ||| |||||||||| || || ||||| ||||| ||| | ||| Sbjct 346954 TCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTTAAATC 347012 Query 79392 TTGTGCTTCTAGGCTATCAAATGGATAATTTAAGA----GAATAAACGCGTCTGCTAATC 79447 || || | |||| ||||||| ||| | ||||||| ||||| | || Sbjct 347013 TTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAA----TCTGCCATTC 347068 Query 79448 CTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCA---GCTTCTGGAA 79504 |||| ||||||||||||||||||| || | | ||||| | || |||| ||| | Sbjct 347069 CTTGTACACCAATACCGATAGGTCGATTACGCATATTAC---TGTCGCGTGCTTGTGGTA 347125 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 ||||||||||| ||||| |||| | | || | ||| || | ||||| | | Sbjct 347126 ACGGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTT 347185 Query 79565 CCTTTAGTT-----TGAG-AAAATCAAATCGTCCATCT--ATTACAAACATGTTCAACGC 79616 | | |||| ||| |||| || | | | || | || || | || || || Sbjct 347186 CATATAGTCGTTGGTGATCAAAAACATTTTTTTCCTCATCAATAAAACGAGGT--AAAGC 347243 Query 79617 GACAGATGCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATTTC 79673 | ||| || || ||||| || || | |||| ||| || | |||| || ||||| Sbjct 347244 AATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAG-ATGAG--TATTCCATGATTTC 347300 Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 ||||| | ||| |||||| || || | |||| || || || || ||||| Sbjct 347301 TGTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACA 347360 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 ||||| ||||| || || || ||| || ||||| || || ||||| | || || Sbjct 347361 TGCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAA 347420 Query 79794 CCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTT--TTCTCTTTCGTATTGTGTA 79851 ||| | || | || | ||| | || | | | | ||| |||| || || | Sbjct 347421 CCAAAGATCTTGTGCTTGAATTGTTT--TTACACCACGTCCTTCCTTTTCATAACGTTCA 347478 Query 79852 TATAA-TCGTTCGAACTCGTCTCCCCA-AACA-TCGTCTAATCCAGGA-CATTCGTCAGG 79907 ||||| || || || || ||| ||| |||| || |||||| || || | | || Sbjct 347479 TATAACTCATTA-AATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGTATTT-GG 347534 Query 79908 ACACATCAACGACCACTCTCCATCATCCTTT---ACTCGTTTCATAAAGAGATCAGGAAT 79964 | ||| | | ||||| |||| ||| || |||| ||| || | ||||||||| Sbjct 347535 ATCCATAAGTGTCCACTT---ATCACGTTTTTCCACACGTTCCATGAATAAATCAGGAAT 347591 Query 79965 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 80024 ||| || || ||| || || | | | || || || ||||| |||||||| || || Sbjct 347592 CCACAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAG 347651 Query 80025 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 80084 |||||| | |||||| |||||| ||||| | || | || | | ||| Sbjct 347652 TAAGAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTT 347711 Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 ||||| || || ||||||| || | ||| |||||||| | || | | ||| || Sbjct 347712 GCGTTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGG 347771 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 | || ||||| ||||| ||||| || || | ||||| |||||| | |||||||| Sbjct 347772 TACAAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATT 347831 Query 80205 ACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 80263 | || ||| | ||| || || || ||||||||| ||| | || || |||| | | Sbjct 347832 ATGAACATGA-ACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTG 347890 Query 80264 TATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTT 80323 ||||||| || ||||| || ||||| || ||| || || ||||| | ||||| Sbjct 347891 TATCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTT 347950 Query 80324 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 | | || || | ||||||||||| |||| || || ||||| Sbjct 347951 GTGGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAA 347999 >seq244 Length=386007 Score = 122 bits (134), Expect = 1e-22 Identities = 375/569 (66%), Gaps = 16/569 (3%) Strand=Plus/Minus Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034 ||||||||||| || | || || |||||| ||||| ||||||||||| || ||| Sbjct 101297 TGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCATCAGACCA 101238 Query 50035 CGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || ||||| || | | |||| ||||| ||||| ||||| || || || || || Sbjct 101237 CGCTTCTTCAGCCAGAACA-GTGCGCAGAATGAGCCAGAGAAGAATATACCCTCCACCGC 101179 Query 50094 GGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCGCTGTCATGTATCCACTTTTGAGC 50150 ||| || ||||| || | |||| | | | | ||| ||| | |||||| || Sbjct 101178 GGCGAATGCAACGAGACGCTCTGCGAACGAGTCGGCACTG---CGGATCCACCGGATCGC 101122 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210 ||| || |||||||| | | ||| || |||||| ||||||| | ||| | || Sbjct 101121 CCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAGAAGACGATCCTT 101062 Query 50211 ttCATTACTA--TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 || ||| | || | | || ||||| | || | ||| | || || || | Sbjct 101061 CTC--TACCAAGTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCTCGGAGTGCACA 101004 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 || |||||||| ||||| || |||||||| || | | || | | |||||| ||||| Sbjct 101003 TTCTCAATGGCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCACCTGCACCTCTGTC 100944 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 || || | || || || || ||| ||||||||||| || || || ||||| | Sbjct 100943 ATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCAGCGAAGAACGCAAGG 100884 Query 50389 ACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTA 50448 || || || || || ||| ||| | || || | ||| || ||||| || Sbjct 100883 ACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCTTCTCCCAGTCCACCATATCATTG 100824 Query 50449 GATATATCTACTTCTTCCACTGTCCAAAATGATGC-CTCTGCCTTTTTATACATATTCCA 50507 | ||| | || |||||||||| | || ||| ||| |||| || || | | ||| Sbjct 100823 CCCAGATCAATCTCCTCCACTGTCC-AGATACTGCTCTCGGCCTCCTTGTATTTCTGCCA 100765 Query 50508 GATGTCATGATATTGGATTGGGAAAATAA 50536 || ||| || || | ||| || |||||| Sbjct 100764 GACGTCGTGGTACTTGATAGG--AAATAA 100738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265935903160