Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12]
319 sequences; 29,822,211 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq22 179 5e-40
seq244 116 5e-21
>seq22
Length=626277
Score = 179 bits (198), Expect = 5e-40
Identities = 712/1096 (65%), Gaps = 52/1096 (5%)
Strand=Plus/Plus
Query 71389 TCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATG 71448
|| ||||||||||||| ||| || || || || || || | ||| | ||||||||
Sbjct 346927 TCATATGGTCCTTCTTCTTCAGCAAGATCGACGCTAGCTTCCACTGCGGCGTAATAAATT 346986
Query 71449 GTTTCGAAAATCTTCTT-ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 71507
|| || ||||| ||||| ||| | ||||| || | |||| ||||||| |||
Sbjct 346987 GTCTCAAAAAT-TTCTTCATTTAAATCTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAG 347045
Query 71508 GA----GAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563
| ||||||| ||||| | |||||| || |||||||||||||||| | | |
Sbjct 347046 CATTGTGAATAAA----TCTGCCATTCCTTGTACACCAATACCGATAGGTCGATTACGCA 347101
Query 71564 TATTAGAAATTTCA---GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620
||||| | || |||| ||| | ||||||||||| ||||| |||| | | || |
Sbjct 347102 TATTAC---TGTCGCGTGCTTGTGGTAACGGATAATAATTCATATCAATAACTCTGTTCA 347158
Query 71621 GATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--------TCT 71672
|||||| | ||||| | || | |||| | |||||| | |
Sbjct 347159 AATTTCTTGTCACAACTTTTGTTATTTCATATAGTCGTTGGTGATCAAAAACATTTTTTT 347218
Query 71673 CC-CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT 71731
|| |||| || | ||| | | ||| ||| ||| || || ||||| || || | ||||
Sbjct 347219 CCTCATCAATAA--AACGAGGTAAAG-CAATAGAAGCAAGGTTACATACTGCAATTTCAT 347275
Query 71732 ---TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788
||| || | |||| || ||||| ||||| | |||| ||||||||| || |
Sbjct 347276 CTTTAG-ATGAG--TATTCCATGATTTCTGTGCATAAATTAGAACACTTGATTACACCAA 347332
Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848
|||| || || || || ||||| ||||| ||||| || ||||| ||| || |
Sbjct 347333 TGTTTTTCTGGTTCGATTTCTTATTACATGCATCTTTATAGAGCATAAAAGGAACTCCTG 347392
Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT 71908
|||| || || ||||| | || || ||| | || | || | ||| | || |
Sbjct 347393 TTTCCATTTGTGATTCAAGTATAGCAAACCAAAGATCTTGTGCTTGAATTGTTTT--TAC 347450
Query 71909 ATCTCTT--TTCTCTTTCGTATTGTGTATATAA-TCGTTCGAACTCGTCTCCCCAAGCAT 71965
| | | | ||| |||| || || |||||| || || || || || || || ||
Sbjct 347451 ACCACGTCCTTCCTTTTCATAACGTTCATATAACTCATTA-AATTCCTCACCATAA-CAG 347508
Query 71966 TGTCT-AATCCAGGA-CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT-- 72021
| || ||||| || || | ||| ||| ||| | || ||||| |||| |||
Sbjct 347509 TCACTTAATCCTGGTGCAGT-ATTTGGATCCATAAGTGTCCACTT---ATCACGTTTTTC 347564
Query 72022 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080
|| |||| ||| || | |||||||||||| || || ||| || || | | | ||
Sbjct 347565 CACACGTTCCATGAATAAATCAGGAATCCACAGGGCATAAAAGAGGTCACGTGCACGTTG 347624
Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
|| || ||||| |||||||| || || |||||| | |||||| |||||| ||
Sbjct 347625 ATCTTCTTTTCCAGTATTCTTCTTTAGTAAGAGGAAGTTAAAAATATCTCCATGCCAAGG 347684
Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200
||| | || | || | | ||| ||||| || || ||||||| || | |||
Sbjct 347685 TTCAAGATAAACAGCAAACGCACCCTTGCGTTTACCACCACCTTGATCTACATAACGAGC 347744
Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260
|||||||| | || | | ||| || | || ||||| |||| ||||| || || |
Sbjct 347745 TGTGTTATTCCACACACGAAGCATCGGTACAAGTCCATTTGATGTTCCATTCGTTCCTGC 347804
Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTT 72319
||||| |||||| | |||||||| || ||| | ||| || || || |||||||
Sbjct 347805 AATATAACTTCCAGCAGAGCGAATATTATGAACATGA-ACACCAATACCACCAGCCATTT 347863
Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379
|| ||| | || || |||| | |||||||| || ||||| |||||||| || ||
Sbjct 347864 TACTGATAATAGCACACTGTTTAAGTGTATCATAAATTCCCTCAATACTATCTTCTTGCA 347923
Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439
| || || ||||| | |||||| | || || | ||||||||||| |
Sbjct 347924 TTGCAACAAGGAAACATGAACTCATTTGTGGGTATGGTGTACCAGAGTTAAATAAGGTTG 347983
Query 72440 GAGAAGCGTGCGTAAA 72455
||| || || |||||
Sbjct 347984 GAGTGGCATGTGTAAA 347999
>seq244
Length=386007
Score = 116 bits (128), Expect = 5e-21
Identities = 291/435 (67%), Gaps = 14/435 (3%)
Strand=Plus/Minus
Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139
|||||||||||||| | || | |||||| ||||| ||||||||||| || |||
Sbjct 101297 TGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCATCAGACCA 101238
Query 42140 CGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
||||| || ||||| || | | |||| ||||| ||||| ||||| || || || || ||
Sbjct 101237 CGCTTCTTCAGCCAGAACAGTG-CGCAGAATGAGCCAGAGAAGAATATACCCTCCACCGC 101179
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCATGTATCCACTTTTGAG 42254
|| || |||| || | |||| | ||| |||||||| | |||||| |
Sbjct 101178 GGCGAATGCAACGAGACGCTCTGC-GAACGAGTCGGCACTG---CGGATCCACCGGATCG 101123
Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314
|||| || |||||||| | | ||| || |||||| ||||||| | ||| | |
Sbjct 101122 CCCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAGAAGACGATCCT 101063
Query 42315 tttCATTACTA--TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372
| || ||| | || | | || ||||| | || | ||| | || || || |
Sbjct 101062 TCTC--TACCAAGTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCTCGGAGTGCAC 101005
Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432
|| |||||||| ||||| || |||||||| || | | || | ||||| || |||||
Sbjct 101004 ATTCTCAATGGCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCACCTGCACCTCTGT 100945
Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492
|| || | || || || || ||| ||||||||||| || || || ||||| |
Sbjct 100944 CATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCAGCGAAGAACGCAAG 100885
Query 42493 TACATGTTTTATAAA 42507
|| || || || ||
Sbjct 100884 GACGTGCTTGATGAA 100870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671136523832440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |