Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq22 179 5e-40 seq244 116 5e-21 >seq22 Length=626277 Score = 179 bits (198), Expect = 5e-40 Identities = 712/1096 (65%), Gaps = 52/1096 (5%) Strand=Plus/Plus Query 71389 TCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATG 71448 || ||||||||||||| ||| || || || || || || | ||| | |||||||| Sbjct 346927 TCATATGGTCCTTCTTCTTCAGCAAGATCGACGCTAGCTTCCACTGCGGCGTAATAAATT 346986 Query 71449 GTTTCGAAAATCTTCTT-ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 71507 || || ||||| ||||| ||| | ||||| || | |||| ||||||| ||| Sbjct 346987 GTCTCAAAAAT-TTCTTCATTTAAATCTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAG 347045 Query 71508 GA----GAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 | ||||||| ||||| | |||||| || |||||||||||||||| | | | Sbjct 347046 CATTGTGAATAAA----TCTGCCATTCCTTGTACACCAATACCGATAGGTCGATTACGCA 347101 Query 71564 TATTAGAAATTTCA---GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 ||||| | || |||| ||| | ||||||||||| ||||| |||| | | || | Sbjct 347102 TATTAC---TGTCGCGTGCTTGTGGTAACGGATAATAATTCATATCAATAACTCTGTTCA 347158 Query 71621 GATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--------TCT 71672 |||||| | ||||| | || | |||| | |||||| | | Sbjct 347159 AATTTCTTGTCACAACTTTTGTTATTTCATATAGTCGTTGGTGATCAAAAACATTTTTTT 347218 Query 71673 CC-CATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT 71731 || |||| || | ||| | | ||| ||| ||| || || ||||| || || | |||| Sbjct 347219 CCTCATCAATAA--AACGAGGTAAAG-CAATAGAAGCAAGGTTACATACTGCAATTTCAT 347275 Query 71732 ---TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788 ||| || | |||| || ||||| ||||| | |||| ||||||||| || | Sbjct 347276 CTTTAG-ATGAG--TATTCCATGATTTCTGTGCATAAATTAGAACACTTGATTACACCAA 347332 Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848 |||| || || || || ||||| ||||| ||||| || ||||| ||| || | Sbjct 347333 TGTTTTTCTGGTTCGATTTCTTATTACATGCATCTTTATAGAGCATAAAAGGAACTCCTG 347392 Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT 71908 |||| || || ||||| | || || ||| | || | || | ||| | || | Sbjct 347393 TTTCCATTTGTGATTCAAGTATAGCAAACCAAAGATCTTGTGCTTGAATTGTTTT--TAC 347450 Query 71909 ATCTCTT--TTCTCTTTCGTATTGTGTATATAA-TCGTTCGAACTCGTCTCCCCAAGCAT 71965 | | | | ||| |||| || || |||||| || || || || || || || || Sbjct 347451 ACCACGTCCTTCCTTTTCATAACGTTCATATAACTCATTA-AATTCCTCACCATAA-CAG 347508 Query 71966 TGTCT-AATCCAGGA-CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT-- 72021 | || ||||| || || | ||| ||| ||| | || ||||| |||| ||| Sbjct 347509 TCACTTAATCCTGGTGCAGT-ATTTGGATCCATAAGTGTCCACTT---ATCACGTTTTTC 347564 Query 72022 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 || |||| ||| || | |||||||||||| || || ||| || || | | | || Sbjct 347565 CACACGTTCCATGAATAAATCAGGAATCCACAGGGCATAAAAGAGGTCACGTGCACGTTG 347624 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || ||||| |||||||| || || |||||| | |||||| |||||| || Sbjct 347625 ATCTTCTTTTCCAGTATTCTTCTTTAGTAAGAGGAAGTTAAAAATATCTCCATGCCAAGG 347684 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 ||| | || | || | | ||| ||||| || || ||||||| || | ||| Sbjct 347685 TTCAAGATAAACAGCAAACGCACCCTTGCGTTTACCACCACCTTGATCTACATAACGAGC 347744 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 |||||||| | || | | ||| || | || ||||| |||| ||||| || || | Sbjct 347745 TGTGTTATTCCACACACGAAGCATCGGTACAAGTCCATTTGATGTTCCATTCGTTCCTGC 347804 Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAA-TTGATAGACCTATTCCCCCTGCCATTT 72319 ||||| |||||| | |||||||| || ||| | ||| || || || ||||||| Sbjct 347805 AATATAACTTCCAGCAGAGCGAATATTATGAACATGA-ACACCAATACCACCAGCCATTT 347863 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 || ||| | || || |||| | |||||||| || ||||| |||||||| || || Sbjct 347864 TACTGATAATAGCACACTGTTTAAGTGTATCATAAATTCCCTCAATACTATCTTCTTGCA 347923 Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439 | || || ||||| | |||||| | || || | ||||||||||| | Sbjct 347924 TTGCAACAAGGAAACATGAACTCATTTGTGGGTATGGTGTACCAGAGTTAAATAAGGTTG 347983 Query 72440 GAGAAGCGTGCGTAAA 72455 ||| || || ||||| Sbjct 347984 GAGTGGCATGTGTAAA 347999 >seq244 Length=386007 Score = 116 bits (128), Expect = 5e-21 Identities = 291/435 (67%), Gaps = 14/435 (3%) Strand=Plus/Minus Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139 |||||||||||||| | || | |||||| ||||| ||||||||||| || ||| Sbjct 101297 TGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCATCAGACCA 101238 Query 42140 CGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || ||||| || | | |||| ||||| ||||| ||||| || || || || || Sbjct 101237 CGCTTCTTCAGCCAGAACAGTG-CGCAGAATGAGCCAGAGAAGAATATACCCTCCACCGC 101179 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCATGTATCCACTTTTGAG 42254 || || |||| || | |||| | ||| |||||||| | |||||| | Sbjct 101178 GGCGAATGCAACGAGACGCTCTGC-GAACGAGTCGGCACTG---CGGATCCACCGGATCG 101123 Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314 |||| || |||||||| | | ||| || |||||| ||||||| | ||| | | Sbjct 101122 CCCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAGAAGACGATCCT 101063 Query 42315 tttCATTACTA--TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 | || ||| | || | | || ||||| | || | ||| | || || || | Sbjct 101062 TCTC--TACCAAGTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCTCGGAGTGCAC 101005 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 || |||||||| ||||| || |||||||| || | | || | ||||| || ||||| Sbjct 101004 ATTCTCAATGGCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCACCTGCACCTCTGT 100945 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 || || | || || || || ||| ||||||||||| || || || ||||| | Sbjct 100944 CATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCAGCGAAGAACGCAAG 100885 Query 42493 TACATGTTTTATAAA 42507 || || || || || Sbjct 100884 GACGTGCTTGATGAA 100870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136523832440