Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq244 120 5e-22 >seq244 Length=386007 Score = 120 bits (132), Expect = 5e-22 Identities = 239/349 (68%), Gaps = 19/349 (5%) Strand=Plus/Plus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| ||||| ||||| ||| |||||||| |||||||| || | |||||| ||| Sbjct 100972 TGCTTCTACGGGTTCCAGATCGCCATTGAGAATGTGCACTCCGAGACGTACTCAGTGCTG 101031 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACAC--ATGCTCTTTAAC--GCAATCGA 125347 | || | |||||| ||| | ||| | | || |||| | || ||| Sbjct 101032 CTGGATACGTACATCACCGACTTG----GTAGAGAAGGATCGTCTTCTGCATGCCATCTC 101087 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGA---TGACGA 125404 ||| | || | ||| | || ||||| | |||| ||| ||||||||| || ||| Sbjct 101088 AACGATTCCATGTATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGGATCCGCAGTGCCGA 101147 Query 125405 CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 | |||| ||| || | || || ||||||||||| || ||||| || ||||| || Sbjct 101148 C------TCGTTCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTC 101201 Query 125465 GGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 || | || |||| | | || ||||| |||||||| || || ||||||||||||||| Sbjct 101202 TGGCTCATTCTGCGCAC-TGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACTGACGT 101260 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| |||||| | || || || || ||||| || || |||||||| Sbjct 101261 TCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCATACCGACTTTGC 101309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056245026440