Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq244 118 9e-22 seq286 95.1 1e-14 >seq244 Length=386007 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| ||||| ||||| ||||||| || | | ||||| Sbjct 42343 CACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTC 42284 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| | ||||| | ||| |||||| ||| | ||||| ||||| Sbjct 42283 CAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTG 42224 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | | ||||| |||| | |||| |||| || |||||| || Sbjct 42223 AATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTT 42164 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || || || || || ||||| Sbjct 42163 GCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||| |||||||| ||||| ||||| ||||||| || | | ||||| Sbjct 41514 CACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTC 41455 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 |||||| ||||| ||| | ||||| | ||| |||||| Sbjct 41454 CAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCC 41418 >seq286 Length=961496 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| ||||| ||||| ||||||| || | | ||||| Sbjct 812635 CACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTC 812694 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCC 18928 |||||| ||||| ||| ||||||| | ||| |||||| Sbjct 812695 CAGCTGCTTACCAGCAAAAATAAGACGCTGTTGATCC 812731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414571188218686