Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq244 131 4e-25 >seq244 Length=386007 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| | || || | || || || || || || ||| Sbjct 42330 GTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTCCAGCTGCTTACCA 42271 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||||||| || || || || || || |||||||||||||| || Sbjct 42270 GCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGCCTTC 42211 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || || || ||||| | || ||||| || | ||| ||||| || || | ||| Sbjct 42210 ACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTTGCCTGTCAATGTC 42151 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 42150 TTTACGAAGATCTGCAT 42134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393694018852