Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq249 134 2e-26 seq255 82.4 9e-11 >seq249 Length=322816 Score = 134 bits (148), Expect = 2e-26 Identities = 278/407 (68%), Gaps = 20/407 (5%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||| | ||| ||||| || || || |||| | ||| |||||||||| | || | Sbjct 217645 ATACACATGTGCATCCCCAAGTGTGTGAACGAGTTCCCCTGGTTTCAGTCCTGTTGCCTT 217586 Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959 ||||| | | ||||||||| |||||||| || | |||||| || || || | |||||| Sbjct 217585 CGCAATCAGAATTGTTAATAACGCATAAGAGGCAATATTAAATGGAACTCCCAGTCCCAT 217526 Query 6960 ATCTGCTGATCTTTGATA--ACATTGACAAGATAAAAT---ATTGTCTATAGCATAAAAT 7014 ||| || | |||||| |||| ||| ||||| ||| || |||| ||| Sbjct 217525 ATCACAGGAGCGTTGATACAACAT--ACAGGATAACTCCCCATTACTTA---CATAGAAT 217471 Query 7015 TGACACAATACATGACATGGAGGTAAAACAG--CCTGATCTATATCAGATGGATTCCAAG 7072 ||| || | |||||| || |||||| | | |||| | | | | |||||||| | Sbjct 217470 TGAGCTAACATATGACAAGGTGGTAAAGCCATTCGTGAT--AAAGCCGCGGGATTCCATG 217413 Query 7073 CAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGT- 7131 |||| | | || | |||||||| |||||||||||||| | || | | |||| Sbjct 217412 CAGTGACAATCATTCTTCTATCATCTGGATTTGTTTTTA---TGGTCTCCACCACTTGTT 217356 Query 7132 --AATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAA 7189 | |||||| | || | || |||||||| || | | ||| | |||| | || |||| Sbjct 217355 TAATTTGATCCACCCCTTTTCCATCATAATTGGTTTTATAATCTTTATACTCCGCACCAA 217296 Query 7190 AATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCA 7236 | |||| ||||||||| ||||| | |||||| | ||| ||||||| Sbjct 217295 AGTGTCGCCATTGAAATCCATAGACAGGACCAAGATCCATTTCTTCA 217249 >seq255 Length=269110 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 19352 AAAATACCTGAAATAGGTGATAAGTT-TGCTTCTTTTACTGCTCAAAAAGGCACATGTGG 19410 ||||| ||| | || |||||||| || ||| | | | || ||||||||| || ||| Sbjct 27715 AAAATTCCTAATATTGGTGATAAATTCTGCAGCCGTCA-TGGTCAAAAAGGAACTAATGG 27657 Query 19411 TATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTAT 19470 || | ||||||||| ||||||||||||| |||||||| || || || | || Sbjct 27656 AATTCAATTTCGTCAAGAGGATATGCCTTTTAACCGTGATGGTATTGTTCCAGACTTGAT 27597 Query 19471 TATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 |||||| || |||||| ||||| || |||||| || Sbjct 27596 TATTAATCCTCATGCTATTCCATCACGTATGACGGTT 27560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869623960400