Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq22 165 1e-35 seq244 111 2e-19 >seq22 Length=626277 Score = 165 bits (182), Expect = 1e-35 Identities = 1060/1668 (64%), Gaps = 76/1668 (5%) Strand=Plus/Plus Query 62026 TACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTC 62084 |||| | || ||||| ||||| |||||||| ||| | |||| ||| ||||||||| Sbjct 346364 TACGCAAGTAATACATACCCGTCTTTAGACC-AGATTTCCATGTGTAGAAATGCATAGAT 346422 Query 62085 GTTAGTTTGGAAT--AACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 62142 || | | || | | | || | | | | | | ||| | | |||||| ||||| | Sbjct 346423 GTCAACT--GACTTGAGGTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAA 346480 Query 62143 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATA 62201 | | ||| | || || ||||| | || | ||| | ||| |||||||||| | | Sbjct 346481 CGTATTTTCCACGATCCGCTGCCATATCAATCAAA-TCTCTCTGTCGAATTTCCCAGACA 346539 Query 62202 GTTTTATAAACTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACCA 62258 |||||| | | ||||| ||| ||||| | ||| ||||||||| || ||| | Sbjct 346540 ACTTTATATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATTA 346599 Query 62259 TCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC--TC 62316 | ||| |||||| ||| || ||||||||||| | | | | |||| | || Sbjct 346600 TATGCAATAATCTGATTTCGCATATCATCATTCCAAAGTC----CAAGTTTAATAAGATC 346655 Query 62317 --TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAAT 62374 ||| |||| | |||||| || | ||||| ||| | || | || ||||| Sbjct 346656 CATAACAAGATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAAT 346715 Query 62375 ATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGT 62434 ||| ||| | ||||| | |||||||||| || | |||||||| ||||||||||| Sbjct 346716 ATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGT 346775 Query 62435 CGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG 62494 ||||| || |||| | |||| |||||| | ||| ||| | | || || || Sbjct 346776 TGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAAG 346835 Query 62495 AGGTTCCCAATTCCAAAGATCCGAC-----GGTACAACNNNNNNNNNNNNNNNTTGTAGA 62549 | ||||| ||||| | ||| || ||| ||||| Sbjct 346836 TGCATCCCAGTTCCACCG-TCC-ACTGCGTGGTTTTTTACCCCATAAATCAAATTGTAAT 346893 Query 62550 ATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62608 | ||| | | || | || ||| | || | || ||||||||||| | ||||| || Sbjct 346894 AAACCTTGAGAAGCAGGACTC-CCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAG 346952 Query 62609 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT-ATTTAGAT 62667 || || || || | ||| |||||||||| || || || || ||||| ||||| || Sbjct 346953 ATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTTAAAT 347011 Query 62668 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGA----GAATAAACGCGTCCGCTAAT 62723 ||| || | |||| ||||||| ||| | ||||||| || || | | Sbjct 347012 CTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAA----TCTGCCATT 347067 Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 ||||| ||||||||||||||||||| || | | ||||| | |||| ||| | Sbjct 347068 CCTTGTACACCAATACCGATAGGTCGATTACGCATATTACTGTCGCGTGCTTGTGGTAAC 347127 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||||||||| ||||| |||| | | || | |||||| | ||||| | || Sbjct 347128 GGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCA 347187 Query 62844 TTCAGTTTGAGAAAATCAAA---------TCGCCCATCTATTACAAACATGTTCAAGGCA 62894 | ||| | |||||| | | |||| || | ||| | | ||| || Sbjct 347188 TATAGTCGTTGGTGATCAAAAACATTTTTTTCCTCATCAATAA--AACGAGGTAAAG-CA 347244 Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTCA 62951 | ||| || || ||||| || || | |||| ||| || | |||| || || || Sbjct 347245 ATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAG-ATGAG--TATTCCATGATTTCT 347301 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| | |||| ||||||||| || | |||| || || || || ||||| Sbjct 347302 GTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACAT 347361 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 ||||| ||||| || || || ||| || ||||| || || ||||| | || || | Sbjct 347362 GCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAAC 347421 Query 63072 CAGACGACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTA 63128 || | || | || | ||| | ||| | | ||||| || |||| || || | Sbjct 347422 CAAAGATCTTGTGCTTGAATTGTT--TTTACACCACGTCCTTCCT-TTTCATAACGTTCA 347478 Query 63129 TACAA-TCGTTCGAACTCGTCTCCCCA-AACATTGTCC-AATCCAGGA-CATTCATCCGG 63184 || || || || || || ||| ||| |||| | | ||||| || || | || || Sbjct 347479 TATAACTCATTA-AATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGT-ATTTGG 347534 Query 63185 ACACATCAACGACCACTC-TC-CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 | ||| | | ||||| || ||| | | ||| |||| ||| || | |||||||||| Sbjct 347535 ATCCATAAGTGTCCACTTATCACGTTTTTC--CACACGTTCCATGAATAAATCAGGAATC 347592 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || || || ||| || || | | | || || || ||||| |||||||| || || Sbjct 347593 CACAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAGT 347652 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 |||||| | |||||| |||||| ||||| | || | || | | || Sbjct 347653 AAGAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTG 347712 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 ||||| || || ||||||| || | ||| |||||||| | || | | ||| || Sbjct 347713 CGTTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGT 347772 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 | || || |||||| | ||||| || || | ||||| |||||| | ||||||||| Sbjct 347773 ACAAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTA 347832 Query 63483 CTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 || ||| | ||| || || || ||||||||| ||| | || || |||| | || Sbjct 347833 TGAACATGA-ACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGT 347891 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63601 ||||| || ||||| || ||||| || ||| || || ||||| | |||||| Sbjct 347892 ATCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTG 347951 Query 63602 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 | || || | ||||||||||| |||| || || ||||| Sbjct 347952 TGGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAA 347999 >seq244 Length=386007 Score = 111 bits (122), Expect = 2e-19 Identities = 373/570 (65%), Gaps = 18/570 (3%) Strand=Plus/Minus Query 33319 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 33378 ||||||||||| || | || || |||||| ||||| ||||||||||| || ||| Sbjct 101297 TGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCATCAGACCA 101238 Query 33379 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCA 33438 ||||| || ||||| || | | |||||| ||||| ||||| || || || || || Sbjct 101237 CGCTTCTTCAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATACCCTCCACCGCG 101178 Query 33439 GCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCACTTTTGAGC 33494 || || |||| || | |||| | ||| |||| ||| | |||||| || Sbjct 101177 GCGAATGCAACGAGACGCTCTGC-GAACGAGTCGGCACTG---CGGATCCACCGGATCGC 101122 Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554 ||| || |||||||| | | ||| || |||||| ||||||| | ||| | || Sbjct 101121 CCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAGAAGACGATCCTT 101062 Query 33555 ttCATTACTA--TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 || ||| | || | | || ||||| | || | ||| | || || || | Sbjct 101061 CTC--TACCAAGTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCTCGGAGTGCACA 101004 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 || |||||||| ||||| || |||||||| || | | || | | ||| || ||||| Sbjct 101003 TTCTCAATGGCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCACCTGCACCTCTGTC 100944 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 || || | ||||| || || ||| ||||||||||| || || || ||||| | Sbjct 100943 ATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCAGCGAAGAACGCAAGG 100884 Query 33733 ACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791 || || || || || | | ||| | | || | || || | ||| || ||||| || Sbjct 100883 ACGTGCTTGATGAAGTGTCGTTCCCCATCGT-TCAGCTTCTCCCAGTCCACCATATCATT 100825 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGC-CTCTGCCTTTTTATACATGTTCC 33850 | ||| | || |||||||||| | || ||| ||| |||| || || | | || Sbjct 100824 GCCCAGATCAATCTCCTCCACTGTCC-AGATACTGCTCTCGGCCTCCTTGTATTTCTGCC 100766 Query 33851 AGATGTCATAATATTGGATTGGGAAAATAA 33880 ||| ||| | || | ||| || |||||| Sbjct 100765 AGACGTCGTGGTACTTGATAGG--AAATAA 100738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944715998040