Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq22 269 7e-67 seq244 111 4e-19 seq308 98.7 3e-15 seq281 98.7 3e-15 seq222 95.1 3e-14 seq221 89.7 1e-12 >seq22 Length=626277 Score = 269 bits (298), Expect = 7e-67 Identities = 1130/1754 (64%), Gaps = 61/1754 (3%) Strand=Plus/Minus Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 |||||||| || || || || |||||||| | || || ||| | ||||| ||| | Sbjct 348107 GATATTGTAGAGCGTCCACAACATATGTTTCTTCGGGTAGCTTTAGGTATTCATGGAGAA 348048 Query 363499 GATGTTGATGCC-GCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC---ACGCA 363554 ||| |||| | | | ||||||||| | | ||| ||| | ||| || || Sbjct 348047 GAT-TTGAAACGTGTAAAGGAAACATATGA---TTTAATGTCTCTGGGATTTTTTACACA 347992 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 ||||| ||||| | | || |||| || | | ||||| ||| ||| || || || Sbjct 347991 TGCCACTCCAACCTTATTTAACTCTGGTACACCATACCCACAAATGAGTTCATGTTTCCT 347932 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 | | |||| | || ||| || ||||| || | ||| |||||||| | |||||| | Sbjct 347931 TGTTGCAATGCAAGAAGATAGTATTGAGGGAATTTATGATACACTTAAACAGTGTGCTAT 347872 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACA 363733 ||| || | || || || |||||||| | || ||| |||| | | | | | Sbjct 347871 TATCAGTAAAATGGCTGGTGGTATTGGTGTTCATGTTCATAATATTCGCTCTGCTGGA-A 347813 Query 363734 GTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTG 363793 |||| ||| || || ||| || ||||| || || || ||||||||||||| Sbjct 347812 GTTATATTGCAGGAACGAATGGAACATCAAATGGACTTGTACCGATGCTTCGTGTGTGGA 347753 Query 363794 ACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGT 363853 | || || || | || || || || ||||| || || ||||| || ||||||||| | | Sbjct 347752 ATAACACAGCTCGTTATGTAGATCAAGGTGGTGGTAAACGCAAGGGTGCGTTTGCTGTTT 347693 Query 363854 ATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAA 363913 |||| || ||| |||| ||||||||| | || || || ||| || || |||| Sbjct 347692 ATCTTGAACCTTGGCATGGAGATATTTTTAACTTCCTCTTACTAAAGAAGAATACTGGAA 347633 Query 363914 AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGA 363973 |||| || ||||||||||| || || ||||| || ||| || |||| || ||| Sbjct 347632 AAGAAGATCAACGTGCACGTGACCTCTTTTATGCCCTGTGGATTCCTGATTTATTCATGG 347573 Query 363974 AGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG-TCCAGGTCTT 364032 | || ||||| | || | || ||| |||| | | | | | | || ||||| | Sbjct 347572 AACGTGTGGAAAAACGTGATAAGTGGACACT-TATGGATCCAAATACTGCACCAGGATTA 347514 Query 364033 TCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAA 364091 || ||| | ||||| || | | || |||| ||| |||||| ||| ||| Sbjct 347513 AGTGACTGT-TATGGTGAGGAATTTAATGAGTTATATGAACGTTATGAAAAGGAAGGACG 347455 Query 364092 GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 | | || ||||||| ||||| | || |||||||| || | || || || || || Sbjct 347454 TGGTGTAAAAACAATTCAAGCACAAGATCTTTGGTTTGCTATACTTGAATCACAAATGGA 347395 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCA 364211 |||||| || | |||| | || |||||| | || || || || |||||| | | Sbjct 347394 AACAGGAGTTCCTTTTATGCTCTATAAAGATGCATGTAATAAGAAATCGAACCAGAAAAA 347335 Query 364212 CCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGA 364271 | ||||| ||| || || |||| || || || || |||||| | || || Sbjct 347334 CATTGGTGTAATCAAGTGTTCTAATTTATGCACAGAAATCATGGAATACTCATCTAAAGA 347275 Query 364272 CGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTT---------GTAAA 364322 || | ||| |||||||||||||| || || || || | ||||| | ||| Sbjct 347274 TGAAATTGCAGTATGTAACCTTGCTTCTATTGC-TTTACCTCGTTTTATTGATGAGGAAA 347216 Query 364323 AGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCT 364382 | | || |||||| ||||| | || ||||| |||| | || || | ||| | Sbjct 347215 AAAATGT--TTTTGATCACCAACGACTATATGAAATAACAAAAGTTGTGACAAGAAATTT 347158 Query 364383 CGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC---CGAGCGTTCTAATAT 364439 ||| ||||| || | |||||||||||| | || |||| ||| | |||||| Sbjct 347157 GAACAGAGTTATTGATATGAATTATTATCCGTTACCACAAGCACGCGACAG---TAATAT 347101 Query 364440 GCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAA 364499 |||| |||| || || ||| |||||||||| || | || || | || | ||||| || Sbjct 347100 GCGTAATCGACCTATCGGTATTGGTGTACAAGGAATGGCAGATTTATTCACAATGCT-AA 347042 Query 364500 GA-TGGCATTTGATTCGC-CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATG 364557 || | ||||| | | || | | ||| | | ||||| | || || ||||| ||||| Sbjct 347041 GACTTCCATTT-ACTAGCAGTAAGGCTAAAGATTTAAATGAAGAAATTTTTGAGACAATT 346983 Query 364558 TATTTTGCCGCAATGACTGCT-TCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTAC 364616 |||| |||||| || ||| ||| ||| | || || | ||| || | Sbjct 346982 TATTACGCCGCAGTGGAAGCTAGCGT-CGATCTTGCTGAAGAAGAAGGACCATATGAAAG 346924 Query 364617 TTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGG-----AATGTC 364671 | | | ||| ||| ||| || || ||| || |||||| ||||| || | Sbjct 346923 ATTTCAAGGGAGTCCTGCTTCTCAAGGTTTATTACAATTTGATTTATGGGGTAAAAAACC 346864 Query 364672 ACGCCATCTGTCCGATGGAACTGGGATACGC-TACGTTCCAAC--GTTAAGAAGCATGGT 364728 |||| || || |||||||||||| | | || | ||| ||||| | | |||| Sbjct 346863 ACGC--AGTGGACGGTGGAACTGGGATGCACTTAAG---GAACGTGTTAAAACGAGTGGT 346809 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 | | || || | | || || ||||| || || || || | || || || || Sbjct 346808 ATGAGAAATTCTTTACTCTTGGCTCCAATGCCAACTGCATCAACATCTCAAATTCTTGGT 346749 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 || || ||||| || ||||| ||||| |||| ||||| ||| || ||||| || Sbjct 346748 AATAATGAGTGTTTTGAACCCTTTACTTCCAATATTTATGTACGTCGTGTTCTAAGTGGT 346689 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 ||||| || || ||||||||||| || || | ||||||| | | || || ||| | Sbjct 346688 GAATTCCCTGTTGTTAATAAGTATCTTGTTATGGATCTTATTAAACTTGGACTTTGGAAT 346629 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG-ATT 364967 || ||| || | || || || ||||||||| || ||||| | || ||| | | Sbjct 346628 GATGATATGCGAAATCAGATTATTGCATATAATGGTTCAGTTCAGAATA-TCAAGGAAAT 346570 Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCAT 365027 |||| ||||| ||| | || ||| || ||||||||| | || | | || Sbjct 346569 TCCATCTGATCTTAAGGAATTATATAAAGTTGTCTGGGAAATTCGACAGAGAGATTTGAT 346510 Query 365028 TGATATGGCGGCCGATCGCGG----TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 ||||||||| || ||||| || | | || | |||||| || || || ||| Sbjct 346509 TGATATGGCAGCGGATCGTGGAAAATACGTTGA----TCAGAGTCAAAGTTTAAATCTAT 346454 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 | || | |||||||| || | ||||| |||||||||||| |||||||| | Sbjct 346453 TTTTGGAAAAACCAACCTCAAGTCAGTTGACATCTATGCATTTCTACACATGGAAATCTG 346394 Query 365144 GTCTTAAGACAGGT 365157 |||| ||||| ||| Sbjct 346393 GTCTAAAGACGGGT 346380 >seq244 Length=386007 Score = 111 bits (122), Expect = 4e-19 Identities = 343/531 (65%), Gaps = 0/531 (0%) Strand=Plus/Plus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT 22479 || |||| || || |||| ||||| || |||||| | ||||| || || Sbjct 101089 ACGATTCCATGTATCCAGAAGAAGGCGGAGTGGGCGATCCGGTGGATCCGCAGTGCCGAC 101148 Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 || ||||| || ||||| ||||||| || | ||| || || || ||||| ||||| || Sbjct 101149 TCGTTCGCAGAGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTCA 101208 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAAT 22599 || || ||| | || ||||| || || |||| | ||||| || || ||||| || Sbjct 101209 TTCTGCGCACTGTTCTGGCTGAAGAAGCGTGGTCTGATGCCCGGACTGACGTTCAGCAAC 101268 Query 22600 GAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAAT 22659 ||| | || || ||||||||||| |||||||| |||||||| | | ||| ||| Sbjct 101269 GAGCTCATCTCGCGGGATGAGGGTCTGCATACCGACTTTGCGTGCCTCTTGTATGAGAAC 101328 Query 22660 CATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAA 22719 | || | | || || ||| | || | | ||| || || | || || || Sbjct 101329 TACATTGTCAACAAGCTGCCAAAGGAGCGAATCCATGAGATCATCCTCGAGGCGGTGGAG 101388 Query 22720 CTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAA 22779 | || || || || ||||| ||| | ||||| | || || || || || | || Sbjct 101389 ATCGAGCGCGAGTTCATCTGCGATGCGCTTCCAGTGCGACTGATCGGGATGAACTCGGAT 101448 Query 22780 TCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCA 22839 ||| ||||| ||| |||| || || || || || | | |||| || | | | Sbjct 101449 CTCATGGCAACATACATTGAATTCGTGGCGGACCGACTGCTGGTCGCACTTGGCAACGAA 101508 Query 22840 AAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAG 22899 ||||| || ||||| ||||| | ||||| | ||||| | | || ||| Sbjct 101509 CGACATTACAAATCAAAGAATCCGTTTGACTTTATGGAGATGATTTCGTTGCAGGGCAAG 101568 Query 22900 ACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || ||||| || || | |||||||| ||||| || || || || ||| Sbjct 101569 ACGAACTTCTTTGAGAAGAAGGTTGGTGAGTACCAGAAGGCGGGCGTGATG 101619 >seq308 Length=912357 Score = 98.7 bits (108), Expect = 3e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27232 GGTTACGAAGGCGCAATTGTTATTGATGCAAAATCGGGGTTTTATACGGATCCAGTCGCC 27291 ||||| ||||| || | ||||||||| | | | || ||||||| ||| | ||| Sbjct 865037 GGTTATGAAGGTGCTACTGTTATTGAACCTATAAAAGGATTTTATAACTGTCCTATTGCC 864978 Query 27292 ACACTTGACTTTGCATCACTATATCCATCAATTATGCTTGCTCACAATTTATGTTACTCA 27351 || |||||||||||||| |||||||| || ||||| ||||||| ||||| ||||||||| Sbjct 864977 ACTCTTGACTTTGCATCTCTATATCCTTCTATTATTATTGCTCATAATTTGTGTTACTCA 864918 Query 27352 AC 27353 || Sbjct 864917 AC 864916 >seq281 Length=66185 Score = 98.7 bits (108), Expect = 3e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 62084 ATCATAATATTCCGGGGCCATTTTGCGAAGATCAGGAAGTCTGGTCCATGGAATGGACTT 62143 ||||||| |||| ||||| || | ||||| | |||||| |||||||||| || Sbjct 5647 ATCATAAAATTCTGGGGCAATATCACGAAGTTTTTGAAGTCGATTCCATGGAATAGAAGG 5706 Query 62144 GAAATCATGATGCTCTACATGATAACCCGCGTTCCAAATAAACATATTAAAAGGTCCATA 62203 ||||||||||| || || ||||| ||||| |||||| | ||| ||| || |||||||| Sbjct 5707 AAAATCATGATGTTCAACGTGATATCCCGCATTCCAAGTTAACCAATTTAATGGTCCATA 5766 Query 62204 ATAAGAA 62210 ||||||| Sbjct 5767 ATAAGAA 5773 >seq222 Length=1158363 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 62084 ATCATAATATTCCGGGGCCATTTTGCGAAGATCAGGAAGTCTGGTCCATGGAATGGACTT 62143 ||||||| |||| ||||| || | ||||| | |||||| |||||||||| || Sbjct 353252 ATCATAAAATTCTGGGGCAATATCACGAAGTTTTTGAAGTCGATTCCATGGAATAGAGGG 353311 Query 62144 GAAATCATGATGCTCTACATGATAACCCGCGTTCCAAATAAACATATTAAAAGGTCCATA 62203 ||||||||||| || || ||||| || || |||||| | ||| ||| || |||||||| Sbjct 353312 AAAATCATGATGTTCAACGTGATATCCTGCATTCCAAGTTAACCAATTTAATGGTCCATA 353371 Query 62204 ATAAGAA 62210 ||||||| Sbjct 353372 ATAAGAA 353378 >seq221 Length=434175 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 78552 AATAAAGATACATCAGTGAATGAACAAAATAATTCATAGTTGCGAACCAGATACCACTAC 78611 |||| | |||||| | ||||| ||||| ||||||||||| || ||||| | |||||| Sbjct 240905 AATAGAAATACATAATAGAATGTACAAAGTAATTCATAGTGGCAAACCAAAGTCCACTAG 240846 Query 78612 CAATGCAAACGGAATATGCATGCCAACAATAAAGAAGAACCGTTAGATGATGATACCAAT 78671 || | | |||| |||||||||| |||| | || || |||||||||||||| Sbjct 240845 ATATTGTATATGCATATCCATGCCAACAGAAAAGCATCACAGTAGCATGATGATACCAAT 240786 Query 78672 GAAGGAAAATTACTGGATTCTTACGAATCAGGAGAAAGAATGTATCTACAAGTTCAACAA 78731 | || || || || || ||||| | | | ||||| | ||||| | | ||| || Sbjct 240785 GCAGAAAGATCACCGGTTTCTTCTGCAAAACAAGAAATACAGTATCCATCATTTCTGGAA 240726 Query 78732 TCTTGGA 78738 ||||||| Sbjct 240725 TCTTGGA 240719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348272949458