Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq244 113 4e-20 >seq244 Length=386007 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | || |||||||| ||||||||||| || || |||||| Sbjct 42348 CGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCC 42289 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || || |||| | |||||| || ||||| || || || || ||| Sbjct 42288 TCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTG 42229 Query 131140 TCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | || ||| | | ||| ||||| ||| ||| ||| | |||| || || Sbjct 42228 TC-CTGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAAT 42170 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || | || |||||||| |||||||| Sbjct 42169 GGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 Score = 100 bits (110), Expect = 3e-16 Identities = 153/215 (71%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| | || |||||||| ||||||| |||| ||| | ||||| |||||| Sbjct 101107 AAGAAGGCGGAGTGGGCGATCCGGTGGATCC---GCAGTGCCGACTCGTTCGCAGAGCGT 101163 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | || || || || |||||||| | || || |||||| || ||| | || Sbjct 101164 CTCGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCTGCGCACTGTTC 101223 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | | || || | || | | |||||||| |||||||| ||||||||||| || ||||| Sbjct 101224 TGGCTGAAGAAGCGTGGTC-TGATGCCCGGACTGACGTTCAGCAACGAGCTCATCTCGCG 101282 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCT 46312 || ||||| |||||||| ||||||||||| |||| Sbjct 101283 GGATGAGGGTCTGCATACCGACTTTGCGTGCCTCT 101317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010917848960