Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq286 95.1 8e-15 seq316 86.0 4e-12 seq244 86.0 4e-12 seq19 82.4 5e-11 >seq286 Length=961496 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 37555 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 37496 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 37495 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 37461 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 519387 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 519446 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 519447 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 519481 >seq316 Length=31082 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||| |||||| |||| |||||||||||||||| | || || |||||| | Sbjct 7413 AAGTCCGTCCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGAACAGAGGGAATCTCAT 7472 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 7473 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 7507 >seq244 Length=386007 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| || || ||| |||||| ||||| ||||| || | || || | || || Sbjct 42343 CACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTC 42284 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || || ||||| || || || |||||||| | ||| | || || |||||| Sbjct 42283 CAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTG 42224 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| ||| ||||||||||| ||||| || | || || || | | ||| || || Sbjct 42223 AATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTT 42164 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || ||||| |||||||| Sbjct 42163 GCCTGTCAATGTCTTTACGAAGATCTGCAT 42134 >seq19 Length=22979 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||| |||||| |||| |||||||||||||||| | || || |||||| | Sbjct 2444 AAGTCCGTCCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGAACAGAGGGAATCTCAT 2503 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || || || Sbjct 2504 TAATCCATTCATGCGCGTCTCTAATTGGAAGAGGA 2538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945897788089