Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq22 187 3e-42 >seq22 Length=626277 Score = 187 bits (206), Expect = 3e-42 Identities = 1065/1668 (64%), Gaps = 76/1668 (5%) Strand=Plus/Plus Query 61881 TACGTAGATAGTACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTC 61939 |||| | || ||||| ||||| |||||||| ||| | |||| ||| ||||||||| Sbjct 346364 TACGCAAGTAATACATACCCGTCTTTAGACC-AGATTTCCATGTGTAGAAATGCATAGAT 346422 Query 61940 GTTAGTTTGGAAT--AACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 61997 || | | || | | | || | | | | | | ||| | | |||||| ||||| | Sbjct 346423 GTCAACT--GACTTGAGGTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAA 346480 Query 61998 TGAAGGCTCCCCTGTCTGCAGCCATTTTTAT--AATCGTCTTTTGTGGAATTTCCCAAAT 62055 | | ||| | || || ||||| | || |||| ||| | || |||||||||| | Sbjct 346481 CGTATTTTCCACGATCCGCTGCCATATCAATCAAATC-TCTCT-GTCGAATTTCCCAGAC 346538 Query 62056 AGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT--TTG-TATTCTGAATGGATCCACC 62112 | |||||| | | ||||| ||| ||||| | ||| ||||||||| || ||| Sbjct 346539 AACTTTATATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATT 346598 Query 62113 ATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAAC--T 62170 || ||| |||||| ||| || ||||||||||| | | | | |||| | | Sbjct 346599 ATATGCAATAATCTGATTTCGCATATCATCATTCCAAAGTC----CAAGTTTAATAAGAT 346654 Query 62171 C--TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAA 62228 | ||| |||| | |||||| || | ||||| ||| | || | || |||| Sbjct 346655 CCATAACAAGATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAA 346714 Query 62229 TATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAG 62288 |||| ||| | ||||| | | |||||||||| || | |||||||| |||||||||| Sbjct 346715 TATTGGAAGTAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAG 346774 Query 62289 TCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTA 62348 | ||||| || |||| | |||| |||||| | ||| ||| | | || || | Sbjct 346775 TTGGCATTGGAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAA 346834 Query 62349 GAGGTTCCCAATTCCAAAGATCCGAC-----GGTACAACNNNNNNNNNNNNNNNTTGTAG 62403 | | ||||| ||||| | ||| || ||| ||||| Sbjct 346835 GTGCATCCCAGTTCCACCG-TCC-ACTGCGTGGTTTTTTACCCCATAAATCAAATTGTAA 346892 Query 62404 AATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 62462 | ||| | | || | || ||| | || | || ||||||||||| | ||||| | Sbjct 346893 TAAACCTTGAGAAGCAGGACTC-CCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAA 346951 Query 62463 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT-ATTTAGA 62521 | || || || || | ||| |||||||||| || || || || ||||| ||||| | Sbjct 346952 GATCGACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAAT-TTCTTCATTTAAA 347010 Query 62522 TCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGA----GAATAAACGCGTCTGCTAA 62577 |||| || | |||| ||||||| ||| | ||||||| ||||| | Sbjct 347011 TCTTTAGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAA----TCTGCCAT 347066 Query 62578 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62637 |||||| ||||||||||||||||||| || | | ||||| | |||| ||| | Sbjct 347067 TCCTTGTACACCAATACCGATAGGTCGATTACGCATATTACTGTCGCGTGCTTGTGGTAA 347126 Query 62638 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62697 ||||||||||| ||||| |||| | | || | |||||| | ||||| | || Sbjct 347127 CGGATAATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTC 347186 Query 62698 CTTCAGTTTGAGAAAATCAAA---------TCGCCCATCTATTACAAACATGTTCAATGC 62748 | ||| | |||||| | | |||| || | ||| | | || || Sbjct 347187 ATATAGTCGTTGGTGATCAAAAACATTTTTTTCCTCATCAATAA--AACGAGGTAAA-GC 347243 Query 62749 AACAGATGCCAGATTACAAACGGCTACCTCAT---TAGCATCCGCATATTGTATTATCTC 62805 || ||| || || ||||| || || | |||| ||| || | |||| || || || Sbjct 347244 AATAGAAGCAAGGTTACATACTGCAATTTCATCTTTAG-ATGAG--TATTCCATGATTTC 347300 Query 62806 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 62865 ||||| | |||| ||||||||| || | |||| || || || || ||||| Sbjct 347301 TGTGCATAAATTAGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACA 347360 Query 62866 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 62925 ||||| ||||| || || || ||| || ||||| || || ||||| | || || Sbjct 347361 TGCATCTTTATAGAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGCAAA 347420 Query 62926 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTATAGTGTA 62983 ||| | || | || | ||| | ||| | | | | ||| |||| || || | Sbjct 347421 CCAAAGATCTTGTGCTTGAATTGTT--TTTACACCACGTCCTTCCTTTTCATAACGTTCA 347478 Query 62984 TACAA-TCGTTCGAACTCGTCTCCCCA-AACATTGTCC-AGTCCAGGA-CATTCATCCGG 63039 || || || || || || ||| ||| |||| | | | ||| || || | || || Sbjct 347479 TATAACTCATTA-AATTC--CTCACCATAACAGTCACTTAATCCTGGTGCAGT-ATTTGG 347534 Query 63040 ACACATCAACGACCACTC-TC-CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097 | ||| | | ||||| || ||| | | ||| |||| ||| || | |||||||||| Sbjct 347535 ATCCATAAGTGTCCACTTATCACGTTTTTC--CACACGTTCCATGAATAAATCAGGAATC 347592 Query 63098 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63157 || || || ||| || || | | | || || || ||||| |||||||| || || Sbjct 347593 CACAGGGCATAAAAGAGGTCACGTGCACGTTGATCTTCTTTTCCAGTATTCTTCTTTAGT 347652 Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217 |||||| | |||||| |||||| ||||| | || | || | | || Sbjct 347653 AAGAGGAAGTTAAAAATATCTCCATGCCAAGGTTCAAGATAAACAGCAAACGCACCCTTG 347712 Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277 ||||| || || ||||||| || | ||| |||||||| | || | | ||| || Sbjct 347713 CGTTTACCACCACCTTGATCTACATAACGAGCTGTGTTATTCCACACACGAAGCATCGGT 347772 Query 63278 ATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA 63337 | || ||||| ||||| ||||| || |||| ||||| |||||| | ||||||||| Sbjct 347773 ACAAGTCCATTTGATGTTCCATTCGTTCCTGCAATATAACTTCCAGCAGAGCGAATATTA 347832 Query 63338 CTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 || ||| | ||| || || || ||||||||| ||| | || || |||| | || Sbjct 347833 TGAACATGA-ACACCAATACCACCAGCCATTTTACTGATAATAGCACACTGTTTAAGTGT 347891 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 63456 |||||| || ||||| |||||||| || ||| || || ||||| | |||||| Sbjct 347892 ATCATAAATTCCCTCAATACTATCTTCTTGCATTGCAACAAGGAAACATGAACTCATTTG 347951 Query 63457 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 | || || | ||||||||||| |||| || || ||||| Sbjct 347952 TGGGTATGGTGTACCAGAGTTAAATAAGGTTGGAGTGGCATGTGTAAA 347999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629473392400