Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq244 132 5e-26 seq111 82.4 9e-11 >seq244 Length=386007 Score = 132 bits (146), Expect = 5e-26 Identities = 400/611 (65%), Gaps = 9/611 (1%) Strand=Plus/Minus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| | |||||||||||||||||| | ||| || || || || || | ||| |||||| Sbjct 101321 TACAAGAGGCACGCAAAGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTG 101262 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CC 93201 || || | || || | ||| || || ||||| ||||| || | || ||| || | || Sbjct 101261 AACGTCAGTCCGGGCATCAGACCACGCTTCTTCAGCCAGAACAGTG-CGCAGAATGAGCC 101203 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 ||| || |||||||| ||||| || || ||||| || | ||| || || || ||| Sbjct 101202 AGAGAAGAATATACCCTCCACCGCGGCGAATGCAACGAGACGCTCTGCGAACGAGTCGG- 101144 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 ||||| |||||| | ||||| || || || |||| ||||| || | ||| Sbjct 101143 --CACTGCGGATCCACCGGATCGCCCACTCCGCCTTCTTCTGGATACATGGAATCGTTGA 101086 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||| || | | || ||| ||| || | || ||||| ||||| | | || Sbjct 101085 GATGGCATGCAGAAGACGATCCTTCTCTACCAAGTCGGTGATGTACGTATCCAGCAGCAC 101026 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 || ||| | || || || |||||||| || || || ||||| |||||||| || | | Sbjct 101025 TGAGTACGTCTCGGAGTGCACATTCTCAATGGCGATCTGGAACCCGTAGAAGCAGCGCAC 100966 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 ||| | | |||||| ||| || | || | | | || || || || || || Sbjct 100965 TTCAGGCACCTGCACCTCTGTCATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTC 100906 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 || || || || || | | ||||| || || ||| || |||| || ||||| Sbjct 100905 ACTCGCAGCGAAGAACGCAAGGACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCTT 100846 Query 93562 ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCA-AAACGATGCT- 93619 ||||| || | ||| || ||||| | || || || ||||| | || |||| Sbjct 100845 CTCCCAGTCCACCATATCATTGCCCAGATCAATCTCCTCCACTGTCCAGATAC--TGCTC 100788 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 || || | ||||| | | ||| | ||| || || | || ||||||| |||| | || Sbjct 100787 TCGGCCTCCTTGTATTTCTGCCAGACGTCGTGGTACTTGATAGGAAATAAGACATAGCGG 100728 Query 93680 TTAGGGTTATC 93690 | ||||| || Sbjct 100727 TCTGGGTTCTC 100717 >seq111 Length=1635300 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | |||||| | | | | |||||||||||| Sbjct 764556 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCTCGTAGAG-GCGTGGGTTCGA 764614 Query 126333 ACCCCAC 126339 ||||||| Sbjct 764615 ACCCCAC 764621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858579517560