Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq244 113 9e-20 >seq244 Length=386007 Score = 113 bits (124), Expect = 9e-20 Identities = 548/857 (64%), Gaps = 30/857 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| || || || | |||||| ||||| || || || | Sbjct 101582 TCAAAGAAGTTCGTCTTGCCCTGCAACGAAATCATCTCCATAAAGTCAAACGGATTCTTT 101523 Query 251623 GCATTGTACTG-CTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| || | | | || |||||||| || | | ||||| ||||| || || | Sbjct 101522 GATTTGTAATGTCGTTCGTTG-CCAAGTGCGACCAGCAGTCGGTCCGCCACGAATTCAAT 101464 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 || | |||| || || |||||||| || |||| || |||| || || ||||| Sbjct 101463 GTATGTTGCCATGAGATCCGAGTTCATCCCGATCAGTCGCACTGGAAGCGCATCGCAGAT 101404 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || ||| | | || ||||| | || | | | | || | ||| Sbjct 101403 GAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCTCATGGATTCGCTCCTTTGGCAG 101344 Query 251802 CTTGTTCTCCA----GCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGT--GCAGACCCT 251854 |||||| | | | | | | |||| ||| | ||| || || ||| ||||||||| Sbjct 101343 CTTGTTGACAATGTAGTTCTCA-TACAAGAGGCACGCAAA---GTCGGTATGCAGACCCT 101288 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCT 251912 | || || ||||| ||||||| | || | ||| || ||||||| ||||| ||| | Sbjct 101287 CATCCCGCGAGATGAGCTCGTTG--CTGAACGTCAGTCCGGGCATCAGACCACGCTTCTT 101230 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGC 251972 |||||||| | |||||| || || |||||||| | | |||||| || | |||| Sbjct 101229 CAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATACCCTCCACCGCGGCGAATGC 101170 Query 251973 AACAAGGCGCTCAGCAAACGACTTGTC-CTGCGACAAGAACTTCTG---TGCCCATGCTG 252028 ||| || ||||| || ||||| | | | ||||| || | | | ||||| | | Sbjct 101169 AACGAGACGCTCTGCGAACGAGTCGGCACTGCG----GATCCACCGGATCGCCCACTCCG 101114 Query 252029 CCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT 252088 ||||||| | || || ||| ||| |||| | ||| | | ||| | Sbjct 101113 CCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAGAAGACGATCCTTCTCTACCA 101054 Query 252089 CGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGA 252148 ||| |||| || ||| ||||| | |||||| |||| || || | || || Sbjct 101053 AGTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCTCGGAGTGCACATTCTCAATGG 100994 Query 252149 ACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 |||||| | | ||||| ||| | ||| | || || || ||| | Sbjct 100993 CGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCACCTGCACCTCTGTCATGAAGCGCT 100934 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 ||| | |||||||| ||| || || || || | || ||||| |||| | | ||||| Sbjct 100933 GTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCAGCGAAGAACGCAAGGACGTGCTTGA 100874 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||| || || | ||||| ||||| || |||||| | || || | |||| Sbjct 100873 TGAAGTGTCGTTCCCCATCGTTCAGCTTCTC---CCAGTCCACCATATCATTGCCCAGAT 100817 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 || || ||||| ||||||| || | | |||| |||||| | ||| | || || Sbjct 100816 CAATCTCCTCCACTGTCCAGATACTGCTCTCGGCCTCCTTGTATTTCTGC-CAGACGTCG 100758 Query 252388 GGGTACTTGATTGGGAA 252404 |||||||||| || || Sbjct 100757 TGGTACTTGATAGGAAA 100741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832599038279