Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq244 129 1e-24 seq253 107 4e-18 seq197 107 4e-18 seq248 91.5 3e-13 seq44 91.5 3e-13 >seq244 Length=386007 Score = 129 bits (142), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || ||||| | |||| ||| ||||||||||| || || ||||| || || | Sbjct 42360 CCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCC 42301 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | ||||| || || ||| Sbjct 42300 AGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGGA 42241 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || |||||||| |||||||||||||| || ||| | ||||| ||| | || || Sbjct 42240 ATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAACAGTGTC-GCTGGCCTCCAC 42182 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | || ||||| || || || | ||||| ||||| |||||||| |||| Sbjct 42181 CTCGAGGGCAATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCATAATGC 42129 Score = 125 bits (138), Expect = 1e-23 Identities = 578/897 (64%), Gaps = 34/897 (4%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| |||||||||||||||||||| ||| ||| |||||||| | |||||||| Sbjct 101620 TCATCACGCCCGCCTTCTGGTACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCT 101561 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 | ||||| | |||||| |||||||| || |||| | | || || | Sbjct 101560 GCAACGAAATCATCTCCATAAAGTCAAACGGATTCTTTGATTTGTAATGTCGTTCGTTGC 101501 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTAC-TGGCTCATCAGGTCCGAG 10112 | ||||| | | ||||| |||||||| || ||||| | || ||| || |||||| Sbjct 101500 CAAGTGCGACCAGCAGTCGGTCCGCCACGAATTCAATGTATGTTGC-CATGAGATCCGAG 101442 Query 10113 TTCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171 ||||| || |||| || || ||| | || ||||| ||||| || ||| | | || Sbjct 101441 TTCATCCCGATCAGTCG-CACTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCAC 101383 Query 10172 CGCTTCCTCGACGATGCTCTTTACCA--CG-TCAAGGGACAGCTTGTTCTCGAGCT---T 10225 ||| ||||| |||| ||| | || || | ||||||||| | | | | Sbjct 101382 CGC---CTCGAGGATGATCTCATGGATTCGCTCCTTTGGCAGCTTGTTGACAATGTAGTT 101326 Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 | ||||| ||| |||| | || || ||||| || || ||||| |||||| Sbjct 101325 CTCATACAAGAGGCACGCAAAGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTT 101266 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 | || ||| |||||||| || || || || ||||||||| | |||||||| || Sbjct 101265 GCTGAACGTCAGTCCGGGCATCAGACCACGCTTCTTCAGCCAGAACAGTGCGCAGAATGA 101206 Query 10346 CCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCG 10405 || ||||| | | ||||||||| | | || ||||| ||||||||||| ||| Sbjct 101205 GCCAGAGAAGAATATACCCTCCACCGCGGCGAATGCAACGAGACGCTCTGCGAACGAGTC 101146 Query 10406 GTCGC-GCGAAA--AGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGT 10462 | | | ||| | | ||| ||||| | |||||||| | || ||||| Sbjct 101145 GGCACTGCGGATCCACCGGATCG---CCCACTCCGCCTTCTTCTGGATACATGGAATCGT 101089 Query 10463 CTCGATAGCCTC--GAAGA-GCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAG 10519 ||| || | ||||| | | || ||| | ||| || | ||| || Sbjct 101088 TGAGATGGCATGCAGAAGACGATCCTT---CTCTACCAAGTCGGTGATGTACGTATCCAG 101032 Query 10520 GAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACAT 10579 |||| ||||| |||| ||| || ||||| || |||| | ||||||| Sbjct 101031 CAGCACTGAGTACGTCTCGGAGTGCACATTCTCAATGGCGATCTGGAACCCGTAGAAGCA 100972 Query 10580 ACGTGCCGAGGGGTCCGTGACTTCCTCGGCA--AAGTTGTTGTTC-AGGTTCTCCATCAC 10636 || | || || || || | || ||| | ||| | | |||||||| ||| Sbjct 100971 GCGCACTTCAGGCACCTGCACCTCT--GTCATGAAGC-GCTGTGCCAAGTTCTCCAGCAC 100915 Query 10637 CATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATC 10696 || || || || | || ||||| | |||| ||||||||||||||| || || |||| Sbjct 100914 AATTCCGTCACTCGCAGCGAAGAACGCAAGGACGTGCTTGATGAAGTGTCGTTCCCCATC 100855 Query 10697 GTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 |||||| || || |||||| |||| ||| | | || | | ||||||||| ||||| Sbjct 100854 GTTCAGCTTCTC---CCAGTCCACCATATCATTGCCCAGATCAATCTCCTCCACTGTCCA 100798 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 || | || |||||| |||||| |||| | | |||| ||||| ||| || || Sbjct 100797 GATACTGCTCTCGGCCTCCTTGTATTTCTGCCAGACGTCGTGGTACTTGATAGGAAA 100741 >seq253 Length=1126320 Score = 107 bits (118), Expect = 4e-18 Identities = 236/354 (67%), Gaps = 0/354 (0%) Strand=Plus/Plus Query 268175 GTCTCGTTGACAAAATCCTTGACAGAATACTGGACCCCAGTTGCAATCACAAAGTCCTCT 268234 ||| ||||| || ||||| || | ||| | || ||||| | ||| |||| || Sbjct 261680 GTCACGTTGCAGAACTCCTTCACGCTGTGCTGCTCGCCTGTTGCTAACACCCAGTCGTCC 261739 Query 268235 GGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAA 268294 |||| | ||| ||||| |||||| | | || ||||||| || || |||||| Sbjct 261740 GGCTGCTCCGCCTGCAGCATCAACCACATGCCATACACGTAGTCCCTTGCGTGTCCCCAA 261799 Query 268295 TCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGT 268354 || ||| |||| || || ||||| | || |||||| || ||| | ||| Sbjct 261800 TCACGCAGGGCGTTCACATTACCGAGCAGCAATTCCTTCTGCAGACCCTTCTTAATGCGC 261859 Query 268355 GCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGG 268414 || | || || || ||||| || || |||||||| | ||| ||||||| Sbjct 261860 ACAGCCGCACGCACAATCTTCTTCGTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGG 261919 Query 268415 TTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTC 268474 ||||| || || || |||||||||||||| || || | ||||||||||||||| || Sbjct 261920 TTGAACAGAATACCATTGCACGCGAACATACCGTACGACTCACGGTAGTTCACTGTAATC 261979 Query 268475 CAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTC 268528 ||| | || | | || || || ||||| || ||||||| |||||| ||| Sbjct 261980 CAGAAGGCGTAGAGTTTCGCCACGGCGTATGGGCTGCGTGGATAGAAGGGTGTC 262033 Score = 107 bits (118), Expect = 4e-18 Identities = 236/354 (67%), Gaps = 0/354 (0%) Strand=Plus/Plus Query 268175 GTCTCGTTGACAAAATCCTTGACAGAATACTGGACCCCAGTTGCAATCACAAAGTCCTCT 268234 ||| ||||| || ||||| || | ||| | || ||||| | ||| |||| || Sbjct 266158 GTCACGTTGCAGAACTCCTTCACGCTGTGCTGCTCGCCTGTTGCTAACACCCAGTCGTCC 266217 Query 268235 GGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAA 268294 |||| | ||| ||||| |||||| | | || ||||||| || || |||||| Sbjct 266218 GGCTGCTCCGCCTGCAGCATCAACCACATGCCATACACGTAGTCCCTTGCGTGTCCCCAA 266277 Query 268295 TCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGT 268354 || ||| |||| || || ||||| | || |||||| || ||| | ||| Sbjct 266278 TCACGCAGGGCGTTCACATTACCGAGCAGCAATTCCTTCTGCAGACCCTTCTTAATGCGC 266337 Query 268355 GCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGG 268414 || | || || || ||||| || || |||||||| | ||| ||||||| Sbjct 266338 ACAGCCGCACGCACAATCTTCTTCGTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGG 266397 Query 268415 TTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTC 268474 ||||| || || || |||||||||||||| || || | ||||||||||||||| || Sbjct 266398 TTGAACAGAATACCATTGCACGCGAACATACCGTACGACTCACGGTAGTTCACTGTAATC 266457 Query 268475 CAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTC 268528 ||| | || | | || || || ||||| || ||||||| |||||| ||| Sbjct 266458 CAGAAGGCGTAGAGTTTCGCCACGGCGTATGGGCTGCGTGGATAGAAGGGTGTC 266511 >seq197 Length=1752 Score = 107 bits (118), Expect = 4e-18 Identities = 236/354 (67%), Gaps = 0/354 (0%) Strand=Plus/Minus Query 268175 GTCTCGTTGACAAAATCCTTGACAGAATACTGGACCCCAGTTGCAATCACAAAGTCCTCT 268234 ||| ||||| || ||||| || | ||| | || ||||| | ||| |||| || Sbjct 1021 GTCACGTTGCAGAACTCCTTCACGCTGTGCTGCTCGCCTGTTGCTAACACCCAGTCGTCC 962 Query 268235 GGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAA 268294 |||| | ||| ||||| |||||| | | || ||||||| || || |||||| Sbjct 961 GGCTGCTCCGCCTGCAGCATCAACCACATGCCATACACGTAGTCCCTTGCGTGTCCCCAA 902 Query 268295 TCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGT 268354 || ||| |||| || || ||||| | || |||||| || ||| | ||| Sbjct 901 TCACGCAGGGCGTTCACATTACCGAGCAGCAATTCCTTCTGCAGACCCTTCTTAATGCGC 842 Query 268355 GCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGG 268414 || | || || || ||||| || || |||||||| | ||| ||||||| Sbjct 841 ACAGCCGCACGCACAATCTTCTTCGTCACAAATGTTGCGCCACGTCGGGGGGACTCGTGG 782 Query 268415 TTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTC 268474 ||||| || || || |||||||||||||| || || | ||||||||||||||| || Sbjct 781 TTGAACAGAATACCATTGCACGCGAACATACCGTACGACTCACGGTAGTTCACTGTAATC 722 Query 268475 CAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTC 268528 ||| | || | | || || || ||||| || ||||||| |||||| ||| Sbjct 721 CAGAAGGCGTAGAGTTTCGCCACGGCGTATGGGCTGCGTGGATAGAAGGGTGTC 668 >seq248 Length=335838 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 160356 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 160299 >seq44 Length=572910 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 406000 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 405943 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 468555 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 468498 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 481694 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 481637 Score = 91.5 bits (100), Expect = 3e-13 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 487676 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGCCCCAC 487619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618725030680