Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq244 100 2e-16 >seq244 Length=386007 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || ||||||||||| || || || || || || || || ||||| Sbjct 42331 CGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTCCAGCTGCTTACC 42272 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| ||||||||||| ||||| ||||| || || ||||| ||||||| || Sbjct 42271 AGCAAAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGCCTT 42212 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | ||||| |||||| ||| || || || | || | || ||||| |||| || Sbjct 42211 CACATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTTGCCTGTCAATGT 42152 Query 114365 TTTTACAAAAATCTGCAT 114382 ||||| || |||||||| Sbjct 42151 CTTTACGAAGATCTGCAT 42134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132766596228