Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq244 302 8e-77 >seq244 Length=386007 Score = 302 bits (334), Expect = 8e-77 Identities = 597/872 (68%), Gaps = 25/872 (3%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| ||| ||||| | |||||| |||| || | | |||||| | Sbjct 100747 ATCAAGTACCACGACGTCTGGCAGAAATACAAGGAGGCCGAGAGCAGTATCTGGACAGTG 100806 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGA 42400 ||||||||||| |||| ||| || | || | ||||||| ||| || |||||| Sbjct 100807 GAGGAGATTGATCTGGGCAATGATATGGTGGACTGGGAGAAGCTGAACGATGGGGAACGA 100866 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 | ||| |||| || | || || |||||||| || |||||| || || || Sbjct 100867 CAC----TTCATCAAGCACGTCCTTGCGTTCTTCGCTGCGAGTGACGGAATTGTGCTGGA 100922 Query 42461 GAACCTGGC-CACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 |||| |||| || | | ||||||| |||||||||| ||| | |||||||||||||| Sbjct 100923 GAACTTGGCACAGC-GCTTCATGACAGAGGTGCAGGTGCCTGAAGTGCGCTGCTTCTACG 100981 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 | |||||||| ||||| ||||| |||||||| ||| |||| | ||||| | |||| Sbjct 100982 GGTTCCAGATCGCCATTGAGAATGTGCACTCCGAGACGTACTCAGTGCTGCTGGATACGT 101041 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 ||||| || || ||| | | || | | ||||| ||||| || || | Sbjct 101042 ACATCACCGACTTGGTAGAGAAGGATCGTCTTCTGCATGCCATCTCAACGATTCCATGTA 101101 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 || ||||||||||||| |||||| || |||||| ||| ||||| | ||||| | Sbjct 101102 TCCAGAAGAAGGCGGAGTGGGCGATCCGGTGGATCCGCAGTGCCGACTC---GTTCGCAG 101158 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | || || || || |||| || ||||| || |||||||| ||| | ||| | | Sbjct 101159 AGCGTCTCGTTGCATTCGCCGCGGTGGAGGGTATATTCTTCTCTGGCTCATTCTGCGCAC 101218 Query 42760 TCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | |||||||| ||| || | ||| |||||||||||| || ||| ||||| |||||| Sbjct 101219 TGTTCTGGCTGAAGAAGCGTG-GTCTGATGCCCGGACTGACGTTCAGCAACGAGCTCATC 101277 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 |||| ||||| ||||||| |||||||| |||||| ||| || | || | Sbjct 101278 TCGCGGGATGAGGGTCTGCATACCGACTTTGCGTGCCTCTTGTATGAGAACTACATTGTC 101337 Query 42879 CACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 |||||| | |||||||| ||| | |||||| ||||| |||||||||||| Sbjct 101338 AACAAGCTGCCAAAGGAGCGAATCCATGAGATCATCCTCGAGGCGGTGGAGATCGAGCGC 101397 Query 42939 GAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 |||||| || | |||| || ||| ||| |||| |||||| || |||||| || Sbjct 101398 GAGTTCATCTGCGATGCGCTTCCAGTGCGACTGATCGGGATGAACTCGGATCTCATG-GC 101456 Query 42999 AA-GTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGC---CGCC 43053 || ||||| | | ||| || |||| || || || || ||| || | || | Sbjct 101457 AACATACATTGAATTCGTGGCGGACCGACTGCTGGTCGCACTTGG----CAACGAACGAC 101512 Query 43054 TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 ||||| | | || || ||||||||||||| || |||||| |||||||||| | Sbjct 101513 ATTACAAATCAAAGAATCCGTTTGACTTTATGGAGATGATTTCGTTGCAGGGCAAGACGA 101572 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| || |||||| || | || |||||| Sbjct 101573 ACTTCTTTGAGAAGAAGGTTGGTGAGTACCAG 101604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335434447440