Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq249 111 1e-19 >seq249 Length=322816 Score = 111 bits (122), Expect = 1e-19 Identities = 184/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 20198 TGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGC 20257 || ||||| || | ||||||| | ||||| ||| | || || || | | |||| | Sbjct 217638 TGTGCATCCCCAAGTGTGTGAACGAGTTCCCCTGGTTTCAGTCCTGTTGCCTTCGCAATC 217579 Query 20258 ATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCC 20317 | | ||||| | | ||| |||||| ||||| |||||||||| ||||| || | Sbjct 217578 AGAATTGTTAATAACGCATAAGAGGCAATATTAAATGGAACTCCCAGTCCCATATCACAG 217519 Query 20318 GACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAG 20377 || | ||||||| | |||||| | ||| || | | |||||| |||||| ||||| Sbjct 217518 GAGCGTTGATACAACATACAGGATAACTCCCCATTACTTACATAGAATTGAGCTAACATA 217459 Query 20378 TGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATT 20437 ||||| || || | ||||| || || |||| || ||||| ||| | ||| ||| Sbjct 217458 TGACAAGGTGGTAAAGCCATTCGTGATAAAGCCGCGGGATTCCATGCAGTGACAATCATT 217399 Query 20438 CTTCTATCGTGCGGATTATTTTTTAT 20463 |||||||| | ||||| ||||||| Sbjct 217398 CTTCTATCATCTGGATTTGTTTTTAT 217373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441371040025960