Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq244 86.0 5e-12 >seq244 Length=386007 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || || |||||||| || |||||| |||||||||||||||||| || || Sbjct 42361 ACCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGC 42302 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| ||||| || ||||| || || ||||| |||||| || Sbjct 42301 CAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCCGGGGG 42242 Query 34020 CACGCTCTCTTTGTCCATAATTTTT 34044 | | ||| |||||| ||| ||| Sbjct 42241 AATACCCTCCTTGTCCTGAATCTTT 42217 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || || |||||||| || |||||| |||||||||||||||||| || || Sbjct 41532 ACCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGC 41473 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || | || |||| ||||| || ||||| || || ||||| |||||| Sbjct 41472 CAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTGATCC 41418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397060856295838