Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq244 107 5e-18 >seq244 Length=386007 Score = 107 bits (118), Expect = 5e-18 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || || | |||| || || || || || ||||| || Sbjct 42360 CCTCCACGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCC 42301 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| ||||||||||| ||| ||| Sbjct 42300 AGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGTTG---ATCCGGG 42244 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || || ||||| || || | || ||||| | || Sbjct 42243 GGAATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTCTCAACAGTGTCGCTGGCCTCC 42184 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| | || ||||| || |||| ||||| ||||| |||||||| ||| Sbjct 42183 ACCTCGAGGGCAATGGTCTTGCCTGTCAATGTCTTTACGAAGATCTGCATAATG 42130 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTA-TGATCGGTATGAATGCCGATCTCATGAA 269177 |||||||| || || || | ||| || | | ||||||| ||||| | ||||||||| Sbjct 101398 GAGTTCATCTGCGATGCGCTTCCA-GTGCGACTGATCGGGATGAACTCGGATCTCATGGC 101456 Query 269178 TCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTA 269237 ||| || ||||||||||| || || | | ||||| || | || | || Sbjct 101457 AACATACATTGAATTCGTGGCGGACCGACTGCTGGTCGCACTTGGCAACGAACGACATTA 101516 Query 269238 CAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTT 269297 ||| || |||||||| || | ||||||||| | |||||| | | || ||||||||||| Sbjct 101517 CAAATCAAAGAATCCGTTTGACTTTATGGAGATGATTTCGTTGCAGGGCAAGACGAACTT 101576 Query 269298 CTTCGAAAAG 269307 ||| || ||| Sbjct 101577 CTTTGAGAAG 101586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649578531282