Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq22 188 9e-43 >seq22 Length=626277 Score = 188 bits (208), Expect = 9e-43 Identities = 691/1065 (65%), Gaps = 39/1065 (4%) Strand=Plus/Plus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||| ||||| |||||||| || || ||||| | || | |||||| || | ||||| Sbjct 346371 GTAATACATACCCGTCTTTAGACCAGATTTCCATGTGTAGAAATGCATAGATGTCAACT- 346429 Query 113662 GGA---GAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCG 113718 || ||| ||||| |||||| || || || | |||||| ||||| | | | Sbjct 346430 -GACTTGAG-GTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAACGTATTT 346487 Query 113719 TCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG-ATTTCCCACACAGTTCTGT 113777 |||||||||||| ||||||||||||| ||| || | | | |||||||| ||| | | | Sbjct 346488 TCCACGATCCGCTGCCATATCAATCAAATCTCTC-TGTCGAATTTCCCAGACAACTTTAT 346546 Query 113778 AGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCC---ACCCGCCT 113834 | | | ||||| |||| ||| || ||| |||||| || | || || | || Sbjct 346547 ATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATTATATGCAA 346606 Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894 | | | ||| || |||||| | ||| || |||| || | |||||| || | Sbjct 346607 TAATC-TGATTTC--GCATATCATCATTCCAAAGTCCAAGTTTAATAAGATCCATAACAA 346663 Query 113895 GATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCG 113954 ||| |||||| |||||| || ||||| || || | | ||| ||||||| | Sbjct 346664 GATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAATATTGGAAG 346723 Query 113955 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGG 114014 | | || ||||| |||||||| ||||| | ||||| | || || || || ||||| | Sbjct 346724 TAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGTTGGCATTG 346783 Query 114015 GTGCCATGAG--AAGGCTGTTACGGA-GACCCTTTTCCCTAATGCGTTCCTTGAGGGCGT 114071 | |||| ||| ||| | | | | || | ||| ||| |||||||| || || | Sbjct 346784 GAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTT---TAACACGTTCCTTAAGTGCAT 346840 Query 114072 CCCAGT-----CGT--AGT-TGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGAT 114123 |||||| ||| | | | | ||| | || ||| | |||||| || | | Sbjct 346841 CCCAGTTCCACCGTCCACTGCGTGGTTTTTTACC-----CCATAAATCAAATTGTAATAA 346895 Query 114124 ACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTC 114183 |||||| || || || || | |||| | || ||||| || || | || || | || Sbjct 346896 ACCTTGAGAAGCAGGACTCCCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAGATC 346955 Query 114184 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 114243 | ||| || || | || |||| ||| |||||||||||||| |||| | | || Sbjct 346956 GACGCTAGCTTCCACTGCGGCGTAATAAATTGTCTCAAAAATTTCTTCATTTAAATCTTT 347015 Query 114244 GGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGAC 114303 |||| | | ||| | |||| || | |||| ||| || | ||||| || Sbjct 347016 AGCCTTACTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAATCTGCCATTCCTTGTAC 347075 Query 114304 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG---GTCTCCACGGGATA 114360 ||| | || || || |||| | |||||| ||| ||| | | || || ||||| Sbjct 347076 ACCAATACCGATAGGTCGATTACGCATATT--ACTGTCGCGTGCTTGTGGTAAC-GGATA 347132 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 | ||||| |||| ||||| || || | |||| | || ||||| ||||| ||||||| || Sbjct 347133 ATAATTCATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCATATAG 347192 Query 114421 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480 || || ||||||| | || |||| | | | ||| | || || || || Sbjct 347193 TCGTTGGTGATCAAAAACATTTTTTTCCTCATCAATAAAACGAGGTAAAGCAATAGAAGC 347252 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 || ||||| || | | ||||| ||| | ||| || || ||||| || || ||||| Sbjct 347253 AAGGTTACATACTGCAATTTCATCTTTAGATGAGTATTCCATGATTTCTGTGCATAAATT 347312 Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 114600 |||| ||| || || | ||| || || || || || | ||||| ||||| || || Sbjct 347313 AGAACACTTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACATGCATCTTTATA 347372 Query 114601 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 ||||| | || || || ||| |||| || | || ||||| Sbjct 347373 GAGCATAAAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGC 347417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351218052520