Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq244 114 1e-20 >seq244 Length=386007 Score = 114 bits (126), Expect = 1e-20 Identities = 250/361 (69%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| |||||||||||||||||| | || ||||| || || || ||||| || ||| Sbjct 101245 ATGCCCGGACTGACGTTCAGCAACGAGCTCATCTCGCGGGATGAGGGTCTGCATACCGAC 101304 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-T 52600 ||||||||||||| || ||| | | | | || || ||| |||| | Sbjct 101305 TTTGCGTGCCTCTTGTATGAGAACTACATTGTCAACAAGCTGCCAAAGGAGCGAATCCAT 101364 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || |||||||||| ||||| ||||| | | ||||| || || Sbjct 101365 GAG-ATCATCCTCGAGGCGGTGGAGATCGAGCGCGAGTTCATCTGCGATGCGCTTCCAGT 101423 Query 52661 -CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGA-GTACATCGAGTTTGTGGCGGAT 52718 ||| ||| | || |||||| || | |||| || | ||||| || || |||||||| Sbjct 101424 GCGA-CTGATCGGGATGAACTCGGATCTCATG-GCAACATACATTGAATTCGTGGCGGAC 101481 Query 52719 CGTCTGTTGGT-GCAGCTCGGGCAGCCAAAG-TACTTCAACGCTCGCAATCCGTTTGAGT 52776 || ||| |||| ||| || |||| | || | | | ||| | ||||||||||| | Sbjct 101482 CGACTGCTGGTCGCA-CT-TGGCAACGAACGACATTACAAATCAAAGAATCCGTTTGACT 101539 Query 52777 TTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGT 52836 ||||| | | |||||| | |||||||||| ||||| || |||||| || || |||| Sbjct 101540 TTATGGAGATGATTTCGTTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTTGGTGAGT 101599 Query 52837 A 52837 | Sbjct 101600 A 101600 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || || || ||||| || || ||||| | | Sbjct 42327 GACTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCA 42268 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||||||||| ||||| || ||||| || ||||| ||| | |||| || | Sbjct 42267 AAGATAAGACGCTGTTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCTTTGCCTTCAC 42209 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || || |||||| | | ||||||||||| | | || || || |||| || || Sbjct 42208 ATTCTCAACAGTGTCGCTGGCCTCCACCTCGAGGGCAATGGTCTTGCCTGTCAATGTCTT 42149 Query 138600 TACAAAAATCTGCAT 138614 ||| || |||||||| Sbjct 42148 TACGAAGATCTGCAT 42134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260421153680