Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq22 196 6e-45 seq244 178 2e-39 >seq22 Length=626277 Score = 196 bits (216), Expect = 6e-45 Identities = 687/1058 (65%), Gaps = 25/1058 (2%) Strand=Plus/Plus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||| ||||| |||||||| || || ||||| | || | |||||| || | ||||| Sbjct 346371 GTAATACATACCCGTCTTTAGACCAGATTTCCATGTGTAGAAATGCATAGATGTCAACT- 346429 Query 115623 GGA---GAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCG 115679 || ||| ||||| |||||| || || || | |||||| ||||| | | | Sbjct 346430 -GACTTGAG-GTTGGTTTTTCCAAAAATAGATTTAAACTTTGACTCTGATCAACGTATTT 346487 Query 115680 TCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG-ATTTCCCACACAGTTCTGT 115738 ||| |||||||| ||||||||||||| ||| || | | | |||||||| ||| | | | Sbjct 346488 TCCACGATCCGCTGCCATATCAATCAAATCTCTC-TGTCGAATTTCCCAGACAACTTTAT 346546 Query 115739 AGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCC---ACCTGCCT 115795 | | | ||||| |||| ||| || ||| |||||| || | || || | ||| Sbjct 346547 ATAATTCCTTAAGATCAGATGGAATTTCCTTGATATTCTGAACTGAACCATTATATGCAA 346606 Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855 | | | ||| || |||||| | ||| || |||| || | |||||| || | Sbjct 346607 TAATC-TGATTTC--GCATATCATCATTCCAAAGTCCAAGTTTAATAAGATCCATAACAA 346663 Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCG 115915 | | |||||| |||||| || ||||| || || | | ||| || |||| | Sbjct 346664 GATACTTATTAACAACAGGGAATTCACCACTTAGAACACGACGTACATAAATATTGGAAG 346723 Query 115916 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 115975 | | || ||||| |||||||| ||||| | ||||| | ||| || || || ||||| | Sbjct 346724 TAAAGGGTTCAAAACACTCATTATTACCAAGAATTTGAGATGTTGATGCAGTTGGCATTG 346783 Query 115976 GTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCC 116035 | |||| ||| | || | | ||| | ||| |||||||| || || |||| Sbjct 346784 GAGCCAAGAGTAAAGAATTTCTCATACCACTCGTTTTAACACGTTCCTTAAGTGCATCCC 346843 Query 116036 AGT--CGTAGTTGA--GCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGG 116091 ||| | || | || | || | | |||| | |||||| || | | |||||| Sbjct 346844 AGTTCCACCGTCCACTGCGTGGTTTTTTAC-CCCATAAATCAAATTGTAATAAACCTTGA 346902 Query 116092 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 116151 || || || || | |||| | |||||||| || || | || || | ||| ||| Sbjct 346903 GAAGCAGGACTCCCTTGAAATCTTTCATATGGTCCTTCTTCTTCAGCAAGATCGACGCTA 346962 Query 116152 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 116211 || || | || |||| ||| |||||||||||||| |||| | | || |||| Sbjct 346963 GCTTCCACTGCGGCGTAATAAATTGTCTCAAAAATTTCTTCATTTAAATCTTTAGCCTTA 347022 Query 116212 TCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGG 116271 | | ||| | || | || | |||| ||| || | ||||| ||||| | Sbjct 347023 CTGCTAGTAAATGGAAGTCTTAGCATTGTGAATAAATCTGCCATTCCTTGTACACCAATA 347082 Query 116272 CCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG---GTCTCCACGGGATAAAAATTC 116328 || || || |||| | |||||| ||| ||| | | || || |||||| ||||| Sbjct 347083 CCGATAGGTCGATTACGCATATT--ACTGTCGCGTGCTTGTGGTAAC-GGATAATAATTC 347139 Query 116329 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 116388 |||| ||||| || || | |||| | || ||||| ||||| ||||||| || || | Sbjct 347140 ATATCAATAACTCTGTTCAAATTTCTTGTCACAACTTTTGTTATTTCATATAGTCGTTGG 347199 Query 116389 TAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 116448 | ||||||| | || |||| | | | ||| | || || || || || ||| Sbjct 347200 TGATCAAAAACATTTTTTTCCTCATCAATAAAACGAGGTAAAGCAATAGAAGCAAGGTTA 347259 Query 116449 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTC 116508 || || | | ||||| ||| | ||| || || ||||| || || ||||| |||| | Sbjct 347260 CATACTGCAATTTCATCTTTAGATGAGTATTCCATGATTTCTGTGCATAAATTAGAACAC 347319 Query 116509 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATA 116568 || || || | ||| || || || || || | ||||| ||||| || ||||||||| Sbjct 347320 TTGATTACACCAATGTTTTTCTGGTTCGATTTCTTATTACATGCATCTTTATAGAGCATA 347379 Query 116569 TATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 | || || || ||| |||| || | || ||||| Sbjct 347380 AAAGGAACTCCTGTTTCCATTTGTGATTCAAGTATAGC 347417 >seq244 Length=386007 Score = 178 bits (196), Expect = 2e-39 Identities = 575/869 (66%), Gaps = 34/869 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| |||||| |||||||| ||||| || | | || ||||||| Sbjct 101601 GTACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAACGAAATCATCTCCAT 101542 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATT-GTTGGCACCCCAATCTGTTTGAGGAGAC 127349 ||| ||||| || |||||||| || || | ||| | || | | | || || | Sbjct 101541 AAAGTCAAACGGATTCTTTGATTTGTAATGTCGTTCGTTGCCAAGTGCGACC-AGCAGTC 101483 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | |||| ||| | |||||||| | ||| || |||||||| ||||| || | | Sbjct 101482 GGTCCGCCACGAATTCAATGTATGTTGCCATGAGATCCGAGTTCATCCCGATCAG-TCGC 101424 Query 127410 A-TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 | ||| ||||| || |||||||| | ||| || ||||| || || | | ||| | Sbjct 101423 ACTGGAAGCGCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCTCA 101364 Query 127469 TGAATAGTGTCCACCC-CAGGTCTATTGCGTAA--AGTCTTGA----AGAGTTCCACAGC 127521 || || ||| ||| | | ||| | ||| | | |||| ||| || Sbjct 101363 TGGATTCGCTCCTTTGGCAGCT-TGTTGACAATGTAGTTCTCATACAAGAGG--CAC-GC 101308 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 ||| || || |||||||| || || |||||||| || || ||| ||| || || Sbjct 101307 AAAGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGG 101248 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| ||||| |||||||||| |||||| | || || ||||||||||||||||| || || Sbjct 101247 CATCAGACCACGCTTCTTCAGCCAGAACAGTGCGCAGAATGAGCCAGAGAAGAATATACC 101188 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG-CGGGACTTTGTATCAAACC 127700 |||||| ||||| |||| |||||||| || || ||| ||| ||| | || || Sbjct 101187 CTCCACCGCGGCGAATGCAACGAGACGCTCTGCGAACGAGTCGGCACTGCGGAT----CC 101132 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC-TTCA-AA 127758 || |||||||||| ||||| |||| ||||||||| | || ||| || | || || Sbjct 101131 ACCGGATCGCCCACTCCGCCTTCTTCTGGATACATGGAATCGTTGAGATGGCATGCAGAA 101072 Query 127759 GA-GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 || | ||||||| | | | || |||||||| |||| | || ||| || || | Sbjct 101071 GACGATCCTTCTCTACCAA---GTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCT 101015 Query 127818 CGCCGTGGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875 || ||| || | ||| ||||| ||| || ||||||| ||||| |||| | Sbjct 101014 CGGAGTGCACATTCTCA--ATGGCGATCTGGAACCCGTAGAAGCAGCGCACTTCAGGCAC 100957 Query 127876 CTGTACCTCATCGGCA-AAATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCA 127933 ||| ||||| | || || | | | | ||||| | |||||||| || | || Sbjct 100956 CTGCACCTC--TGTCATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGTCACTCGCA 100899 Query 127934 GCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAG 127993 || || ||||| |||| | ||| ||||| | |||| |||||||| ||| |||| Sbjct 100898 GCGAAGAACGCAAGGACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCTTCTCCCAG 100839 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTC 128053 || | | ||| || ||||| | ||||||| | ||||| | || | | |||| | Sbjct 100838 TCCACCATATCATTGCCCAGATCAATCTCCTCCACTGTCCAGATACTGCTCTCGGCCTCC 100779 Query 128054 TTATAGAGTTCCCAGAGGTGGGGATACTT 128082 || || | ||||| || | | ||||| Sbjct 100778 TTGTATTTCTGCCAGACGTCGTGGTACTT 100750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504753640040