Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq244 134 2e-26 >seq244 Length=386007 Score = 134 bits (148), Expect = 2e-26 Identities = 410/625 (66%), Gaps = 13/625 (2%) Strand=Plus/Minus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || |||||||| || ||||| |||||||||| || || || ||||| || | || Sbjct 101591 ACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAACGAAATCATCTCCATAAAGTCAAAC 101532 Query 159704 GGGTTCTTCAC---GTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCC 159760 || ||||| || || || |||| || || || |||||| | ||| ||| Sbjct 101531 GGATTCTTTGATTTGTAATGTCG-TTCGTTG--CCAAGTGCGACCAGCAGTCGGTCCGCC 101475 Query 159761 ACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGC 159820 || ||||| ||||| | ||| | || |||| ||||| | ||| | || || ||| Sbjct 101474 ACGAATTCAATGTATGTTGCCATGAGATCCGAGTTCATCCCGATCAGTCGCACTGGAAGC 101415 Query 159821 GCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT 159880 || || | | ||||| ||| ||||| ||||| ||| | |||| || || Sbjct 101414 GCATCGCAGATGAACTCGCGCTCGATCTCCACCGCCTCGAGGATGATCTCATGGATTCGC 101355 Query 159881 TCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 || | | ||||| | ||||| || || | ||| |||||||||||||||| ||| Sbjct 101354 TCCTTTGGCAGCTTGTTGACAATGTAGTTCTCATACAAGAGGCACGCAAAGTCGGTATGC 101295 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 || ||||| ||||| ||||||| ||||||| | | || || ||||| | |||||| Sbjct 101294 AGACCCTCATCCCGCGAGATGAGCTCGTTGCTGAACGTCAGTCCGGGCATCAGACCACGC 101235 Query 160001 GGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 || ||||| || | | |||| || | || || || || |||||||| || || Sbjct 101234 TTCTTCAGCCAGAACA-GTGCGCAGAATGAGCCAGAGAAGAATATACCCTCCACCGCGGC 101176 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCA 160119 || || ||||| | ||| | || ||| || || || |||||| | ||||| Sbjct 101175 GAATGCAACGAGACGCTCTGCGAACGAGTCGGCACTG---CGGATCCACCGGATCGCCCA 101119 Query 160120 TTCAGCCTTCTTTGCGATGCACGGCATGCGCT-CGACGGCGTTAAACAATCTGTCCTGCT 160178 || |||||||| ||| || || || || | || ||| | | | | |||| || Sbjct 101118 CTCCGCCTTCTTCTGGATACATGGAAT-CGTTGAGATGGCATGCAGAAGACGATCCTTCT 101060 Query 160179 CCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTT 160238 | || || |||| ||| | | |||| |||||| | || | ||||||||| | Sbjct 101059 CTACCAAGTCGGTGATGTACGTATCCAGCAGCACTGAGTACGTCTCGGAGTGCACATTCT 101000 Query 160239 CGATGGCCATCTGAAAGTTGTAGAA 160263 | ||||| ||||| || |||||| Sbjct 100999 CAATGGCGATCTGGAACCCGTAGAA 100975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152029318640