Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq244 264 1e-65 >seq244 Length=386007 Score = 264 bits (292), Expect = 1e-65 Identities = 624/931 (67%), Gaps = 16/931 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || || || ||||| |||||||| || || || || |||| Sbjct 101619 CATCACGCCCGCCTTCTGGTACTCACCAACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTG 101560 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGC--TTGGTGCCG 132708 ||| ||||| | | |||||| || || || || || ||||| || || || | Sbjct 101559 CAACGAAATCATCTCCATAAAGTCAAACGGATTCTTTGATTTGTAATGTCGTTCGTTGCC 101500 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAA 132768 | || |||| ||||| | ||| |||||||| || |||||| | |||| || | Sbjct 101499 A--AGTGCGACCAGCAGTCGGTCCGCCACGAATTCAATGTATGTTGCCATGAGATCCGAG 101442 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 || | || | ||| ||||| || ||||| ||| || ||| || ||||||| | || Sbjct 101441 TTCATCCCGATCAGTCGCACTGGAAGCGCATCGCAGATGAACTCGC-GCTCGATCTCCAC 101383 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCC-GTTGCACCA---AATGCT 132883 ||| ||| || ||| || | ||| || | || |||| || | | | || Sbjct 101382 CGCCTCGAGGATGATCTCATGGATTCGCTCCTTTGGCAGCTTGTTG-ACAATGTAGTTCT 101324 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 ||| | ||| ||||||||| ||||| ||||| |||| || ||||| ||||||| Sbjct 101323 CATACAAGAGGCACGCAAAGTCGGTATGCAGACCCTCATCCCGCGAGATGAGCTCGTTGC 101264 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| |||||||| || || || || || ||||| || | ||| ||| || Sbjct 101263 TGAACGTCAGTCCGGGCATCAGACCACGCTTCTTCAGCCAGAACAGTGCGCAGAATGAGC 101204 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||| | ||||| || || ||||| || || || ||||| |||||| | | Sbjct 101203 CAGAGAAGAATATACCCTCCACCGCGGCGAATGCAACGAGACGCTCTGCGAACGAGTCGG 101144 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | ||| | ||||| || | |||||| || ||||| | | || || || |||||| Sbjct 101143 CACTGCGG---ATCCACCGGATCGCCCACTCCGCCTTCTTCTGGATACATGGAATCGTTG 101087 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGG 133183 |||||| | || | ||| |||||| || || | ||| || || | || Sbjct 101086 AGATGGCATGCAGAAGACGATCCTTCTCTACCAAGTCGGTGATGTACGTATCCAGCAGCA 101027 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 || ||| | || ||||| || ||||| |||||||| || || ||||| ||||| ||| Sbjct 101026 CTGAGTACGTCTCGGAGTGCACATTCTCAATGGCGATCTGGAACCCGTAGAAGCAGCGCA 100967 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 | || ||||||||| ||| ||| |||| ||| || || || || |||| Sbjct 100966 CTTCAGGCACCTGCACCTCTGTCATGAAGCGCTGTGCCAAGTTCTCCAGCACAATTCCGT 100907 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 | || || ||||| || || || |||||||||||||| || || || ||||||| Sbjct 100906 CACTCGCAGCGAAGAACGCAAGGACGTGCTTGATGAAGTGTCGTTCCCCATCGTTCAGCT 100847 Query 133364 GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA-AAACGACGCC 133422 ||||||||| | | || ||| ||| || | |||||| || ||||| | || | | Sbjct 100846 TCTCCCAGTCCACCATATCATTGCCCAGATCAATCTCCTCCACTGTCCAGATACTGC-TC 100788 Query 133423 TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGG 133482 ||||| | ||||| | ||| | ||| || | || ||||| | ||| | ||| Sbjct 100787 TCGGCCTCCTTGTATTTCTGCCAGACGTCGTGGTACTTGATAGGAAATAAGACATAGCGG 100728 Query 133483 CGGGGGTTTTCGCGCAACAGCGGCTCCGCTT 133513 ||||| ||||||| ||| |||||| ||| Sbjct 100727 TCTGGGTTCTCGCGCAGCAGTGGCTCCACTT 100697 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || | || ||||| ||||| || |||| || ||||||| | Sbjct 42134 ATGCAGATCTTCGTAAAGACATTGACAGGCAAGACCATTGCCCTCGAGGTGGAGGCCAGC 42193 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| || | | | || | ||| || | ||||| ||||| |||||| | || ||| Sbjct 42194 GACACTGTTGAGAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAA 42253 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| || | |||||||| ||||||||| Sbjct 42254 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTGGCGGACTACAAC 42313 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | |||||||| ||||||| || Sbjct 42314 ATTCAGAAGGAGTCCACGCTGCACCTGGTGCTCCG 42348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170805560960