Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq133 208 3e-48 seq22 91.5 6e-13 seq166 89.7 2e-12 seq308 84.2 9e-11 seq99 84.2 9e-11 >seq133 Length=495741 Score = 208 bits (230), Expect = 3e-48 Identities = 473/707 (67%), Gaps = 6/707 (1%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| ||||||||||| || |||| ||| ||||| ||||| | | | |||| | Sbjct 161131 GCTATTGGTATTGATCTTGGCACAACCTATTCTTGTGTTGGTGTCTTCAAGAATGACCAA 161072 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || || || || ||||| |||||| || || || ||||||| || ||||| Sbjct 161071 GTGGAGATCATCGCTAATGATCAAGGAAACCGCACAACACCTTCATATGTGGCGTTTACA 161012 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || |||| | ||| | || | || || || ||||| | ||| ||| | | | Sbjct 161011 GAGACAGAGCGTCTTGTTGGTGATGCCGCAAAGAATCAAGTGGCAATG--AATCCAACCA 160954 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 ||||||| | |||||| |||||| | ||||| || | || ||||||| | | | || Sbjct 160953 ACACAGTCTTTGATGCGAAACGTATGATTGGTCGCAAGTTTGATGATCCTGATTTGCAGT 160894 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || || | | | | || | || | | |||||||| | || | Sbjct 160893 CTGATATGAAGCACTGGCCCTTTAAGGTTACAGTTCGAGATGGAAAGCCAGTGGTACAGG 160834 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | ||| |||| || || || || || || || ||||| | |||||||| Sbjct 160833 TGGAGTATCAAGGCGAGACCAAGACATTCTTCCCAGAGGAAATCAGTGCGATGGTTCTGG 160774 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTA 451331 |||||||| |||| ||||||| |||||||||| || || | | || || | | Sbjct 160773 GAAAAATGAAGGAAATAGCAGAAGCATATATTGGTCTACCCGTAAAGAAGGCGGTGGTGA 160714 Query 451332 CTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTG 451391 | |||||||| || || |||||| | || || || || || || ||||| || ||||| Sbjct 160713 CAGTTCCCGCATACTTTAATGATTCGCAGCGACAGGCTACAAAGGATGCTGGTGCTATTG 160654 Query 451392 CTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGAC 451451 ||||||| |||| | || ||||||||||| || ||||| ||||| | || || || Sbjct 160653 CTGGTTTGGATGTGTTACGTATTATTAATGAGCCAACAGCTGCTGCCATTGCCTACGGTA 160594 Query 451452 TAGGAAAATCAAA-AGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 | ||| || ||| ||| | | |||||| | | | |||||| ||||||| || Sbjct 160593 T-GGATAAGAAAACAGATAAGGGAGAAAAGGTGGTCCTTATCTTTGATCTTGGTGGTGGT 160535 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 || |||| || |||| | ||||| | ||| | |||||||| |||||||| Sbjct 160534 ACCTTTGATGTAACTTTACTCACTATTGATGGTGGTATTTTTGAAGTGAAGGCAACGGCG 160475 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA 451617 || ||||| || | || ||||||||| |||||||| ||||||| Sbjct 160474 GGAGATACCCACTTGGGTGGTGAAGATTTTGATAATCGCCTTGTGGA 160428 Score = 98.7 bits (108), Expect = 4e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||||||||| ||||| || |||||||| || || || ||| |||||| | ||| | Sbjct 160054 AATCCTGATGAGGCTGTGGCTTATGGTGCCGCCGTACAGGCACATATTCTCTCTGGTGGA 159995 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | |||||| | || |||||||| | |||||||||||||| |||||||| || Sbjct 159994 CGTTCTGAAAAGACTGAAGGACTTCTGTTACTGGATGTAACACCTCTTTCTCTTGGTGTG 159935 Query 452111 GAAACAGCTGGTGGAATGATGACT 452134 ||||| ||||| ||| | ||| || Sbjct 159934 GAAACTGCTGGAGGAGTTATGTCT 159911 >seq22 Length=626277 Score = 91.5 bits (100), Expect = 6e-13 Identities = 181/268 (68%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 ||||||| ||||| || ||||||||||| || || || | || || ||||| || | Sbjct 510193 TTACTGTGCCCGCGTACTTCAATGATGCGCAGCGCCAGTCGACGAAGGATGCCGGGACGA 510252 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| || | ||||| | || ||||| ||||| ||||| || || || | ||||| | Sbjct 510253 TTGCGGGACTTAATGTCGTGCGCATTATCAATGAGCCTACGGCTGCGGCCATTGCATACG 510312 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 |||| ||| | || ||| || ||||| || | || ||||| |||| || | Sbjct 510313 GACT--GAACA-------AAGCAGGCGAGAAAAACATCCTTGTGTTTGACCTTGGCGGTG 510363 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 | || |||| || | ||| | || || || || | || || || |||||| | Sbjct 510364 GCACCTTTGATGTGTCCCTGCTTACGATCGACGAGGGCTTCTTCGAGGTTGTGGCAACGA 510423 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGA 451596 | ||||| || || || || ||||| || Sbjct 510424 ACGGTGACACACACCTTGGTGGTGAGGA 510451 >seq166 Length=457962 Score = 89.7 bits (98), Expect = 2e-12 Identities = 288/443 (65%), Gaps = 7/443 (2%) Strand=Plus/Minus Query 364565 TATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGAGCAAA 364624 ||||||| | | | |||||||| |||||| |||| |||| ||| ||| | | Sbjct 232636 TATTCCAAGTGTTATAGATGGATTAAAACCTGGTCAACGAAAGATTATTTTTTCTTCT-- 232579 Query 364625 TTTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTTTGTATCTGA 364684 ||||| | | | | |||| | ||| || | ||| | || |||| || ||||| Sbjct 232578 TTTAAACGTAACCTTACACGATCTATTAAG-GTGGTACAACTTGCTGGTTACGTTTCTGA 232520 Query 364685 CCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAATGGCACA 364744 | | ||||||||||| || || | ||| | | | ||| | ||| | ||||| Sbjct 232519 ACATGCCGCTTATCATCATGGAGAACAATCATTAGTACAAACTATAGTAGGATTAGCACA 232460 Query 364745 AAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGTCG 364804 | ||| ||| ||| |||||| || || || ||| | | || |||||||| | || Sbjct 232459 AGATTATGTGGGATCAAATAATTTACCACTATTACAACAAGATGGTCAATTTGGTACACG 232400 Query 364805 AGTAATGGGAGGTAAAGATTCTGCCAGCCCACGTTATATTTGGACCAAACTTGAAAAAGT 364864 | |||||||||||| |||| |||||||| | || ||||| ||| | Sbjct 232399 TTTGCAAGGAGGTAAAGATCATGCCGCAGGTCGTTATATCTTTACACGACTTGCAAATAT 232340 Query 364865 GGCAGGATTAATATTTAGAAAAGA--AGATAATCCAATTTTAAATTATATTAATGATGAT 364922 ||| |||| |||||| | | |||| || || || | |||| |||||||| Sbjct 232339 TGCAAGATT--TATTTATCACCCATCAGATGATTATGTTGTAGAATATAAGGATGATGAT 232282 Query 364923 GGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAATGGA 364982 ||| | || |||||| | |||| ||||||||||||| ||| | | ||||||||| Sbjct 232281 GGACTTTCTGTAGAACCTTTTTATTATGTTCCTATTATTCCAATGGTACTTGTAAATGGA 232222 Query 364983 GCAACAGGCATTGGTACTGGTTT 365005 | | || ||||| || || || Sbjct 232221 ACTTCTGGTATTGGAACAGGATT 232199 >seq308 Length=912357 Score = 84.2 bits (92), Expect = 9e-11 Identities = 125/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 549245 GTAAATCAGAACC--TTATCGTCAATATATATGTACTTTAAATAGTTGTGATAATATAGA 549302 || |||||||||| ||| || | || ||||| ||||||||| ||||||| | ||| | Sbjct 865753 GTGAATCAGAACCACTTA-CG-CGATCTATATTTACTTTAAAAAGTTGTGGAACTATCGC 865696 Query 549303 GGGTGCTACAGTGGAATCATTTGATGTAGAAAGTGATTTACTCTTAGCTTGGTTAGAAGA 549362 |||||| ||| | |||| |||| |||| || | || | |||||| || Sbjct 865695 TGGTGCTCAAGTTTACTCATATGATACAGAAGAAGAAATGCTTCTGGCTTGGGTACGTTT 865636 Query 549363 AATAAAAAATAGTGATGCAGATATTTTAACAGGATATAATATTTTTTATTTTGA 549416 | ||| || |||| | |||||||| |||||||||||||||| | ||||||| Sbjct 865635 CGTTAAACTTATTGATCCTGATATTTTTACAGGATATAATATTTGTAATTTTGA 865582 >seq99 Length=521834 Score = 84.2 bits (92), Expect = 9e-11 Identities = 153/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 364578 GTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGAGCAAATTTAAGAGGATTA 364637 || |||||||| |||||||| ||| | |||||||| |||| || | | | || ||| Sbjct 432860 GTAGATGGATTAAAACCTTCACAACGTAAAATTTT--ATGG-GCTATTATGCGACGATCT 432804 Query 364638 GAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTTTTGTATCTGACCGGGTAGCTTAT 364697 | ||| || | ||||||||| ||| | | |||| | ||||| || | Sbjct 432803 GGAAATGAATCTGCAAAAGTAGCCCAACTTTCTGGTTACATCTCTGAAGTTTCTGCATTC 432744 Query 364698 CATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAATGGCACAAAATTTTGTTGGA 364757 ||||| ||||||| | |||| || | || ||| |||||||||||||||| ||| Sbjct 432743 CATCATGGTGAGGTATCTTTACAGGAGACGATTATTAAAATGGCACAAAATTTTACAGGA 432684 Query 364758 AGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGA 364799 | |||||| | ||| | || | |||| | || ||||||||| Sbjct 432683 GGAAATAATATCAATCTTCTTGTACCAGAGGGTCAATTTGGA 432642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975710324868452