Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20theileri_20[genbank_20GCA_5F002087225.1_202017-04-12] 319 sequences; 29,822,211 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq133 383 1e-100 seq275 113 3e-19 seq258 100 2e-15 seq66 96.9 3e-14 seq166 89.7 4e-12 seq193 87.8 1e-11 >seq133 Length=495741 Score = 383 bits (424), Expect = 1e-100 Identities = 878/1307 (67%), Gaps = 31/1307 (2%) Strand=Plus/Plus Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCT 517482 |||||||| | || || | |||| |||| ||||||| | ||| | || | ||| | Sbjct 159840 TGATTATCAGCATTGGTAGAGAATA-TCTGCGATTTTTGAATAGGCACAGTAGAGTTACG 159898 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 | ||||| | | ||||| || || || ||||| | ||||||||||||||| || || Sbjct 159899 AGGAATAAGAACAGACATAACTCCTCCAGCAGTTTCCACACCAAGAGAAAGAGGTGTTAC 159958 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 517602 ||| | || | || || | |||||| | | |||| |||||| ||| || Sbjct 159959 ATCCAGTAACAGAAGTCCTTCAGTCTTTTCAGAACGTCCACCAGAGAGAATATGTGCCTG 160018 Query 517603 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACC 517662 | || |||||||| || ||||| ||||||||||||| || ||| ||| |||||| Sbjct 160019 TACGGCGGCACCATAAGCCACAGCCTCATCAGGATTAATAGAACGATTGGGTTCTTTACC 160078 Query 517663 ATTGAAAAAATTTGAAAGAAGTTGTCT--TACCTTAGGAATACGAGATGATCCTCCAACT 517720 || || || || || |||| ||| | |||||||||| ||||| ||||| Sbjct 160079 TCCAAAGAAGTTCTGAACAATTTGTTGAATACGT--GGAATACGAGTGGATCCACCAACC 160136 Query 517721 AATACAATTTCATGCACCT---GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCA 517777 || || | || || || | ||| || ||| |||||| ||||| |||| Sbjct 160137 AACACCACATCGTGAACATCACGTGCTT---CCATACCCGAATCCTGCAAAACCTTTTTC 160193 Query 517778 ACGGGTTCAAGACC-CGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 517836 || |||||||| | ||||| || | || ||| | |||||| || ||| | || Sbjct 160194 ACTGGTTCAAGGCAACGCTCAAATTGA-TCACGACACATTTCTTCAAAACGAGCACGTGT 160252 Query 517837 AAGAGT-GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAG 517895 || | || | | | ||| ||| || | || | ||||| ||| | |||| | Sbjct 160253 AATCTTTGAGAAGAGA-TCACATCCATCATATAAGGCATCAATTTCCACAGTAGCAT--- 160308 Query 517896 TCGAAGAA---GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG 517952 | |||||| || |||| || || |||| |||||||| || | || | ||| | | Sbjct 160309 TGGAAGAACTGGAGAGTGTTCGCTTCACACGCTCACATGCCGTTCGCAGACGTCGCACAG 160368 Query 517953 CTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG 518012 || ||| | | | |||| || | | | |||| || || | | | | Sbjct 160369 CTCGTGCATTTCCACGTACATCTTTTCCAAAACGTGTCTTAAACTCCGTAGCGAAGTAAT 160428 Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 ||||| |||||||||||||||||||| ||||| | |||| ||| | ||| || | | Sbjct 160429 CCACAAGGCGATTATCAAAATCTTCACCACCCAAGTGGGTATCTCCCGCCGTTGCCTTCA 160488 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 ||| |||| ||| | |||| || | | |||||||||| ||| |||||||| | || Sbjct 160489 CTTCAAAAATACCACCATCAATAGTGAGTAAAGTTACATCAAAGGTACCACCACCAAGAT 160548 Query 518133 CAAAAATAAGTACATTCATTTCT---TTGTCTTGGTTTTTATCAAGACCATACGCAAAAG 518189 |||| ||||| || | ||||| || ||| || ||||| | ||| || |||| | Sbjct 160549 CAAAGATAAGGACCACCTTTTCTCCCTTATCTGTTTTCTTATCCATACCGTAGGCAATGG 160608 Query 518190 CAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCAT 518249 ||||||| ||||| ||||||||||| | || |||| | ||||||||| || |||| Sbjct 160609 CAGCAGCTGTTGGCTCATTAATAATACGTAACACATCCAAACCAGCAATAGCACCAGCAT 160668 Query 518250 CTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAG 518309 | || || || |||| || ||||| ||||| ||||| ||||| || | || || | Sbjct 160669 CCTTTGTAGCCTGTCGCTGCGAATCATTAAAGTATGCGGGAACTGTCACCACCGCCTTCT 160728 Query 518310 TTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATG 518369 |||| | ||||||||| || ||| ||| |||||||| | | || ||| | Sbjct 160729 TTACGGGTAGACCAATATATGCTTCTGCTATTTCCTTCATTTTTCCCAGAACCATCGCAC 160788 Query 518370 AAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTT 518429 |||| |||||| | || ||||| || |||||| || | | ||| | Sbjct 160789 TGATTTCCTCTGGGAAGAATGTCTTGGTCTCGCCTTGATACTCCACCTGTACCACTGGCT 160848 Query 518430 TATTACCAACATTAA---TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTT 518486 | ||| | || |||| ||||| ||||||| |||||||| || || | | Sbjct 160849 TT---CCATCTCGAACTGTAACCTTAAAGGGCCAGTGCTTCATATCAGACTGCAAATCAG 160905 Query 518487 GGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAA 518546 | |||| ||| | | |||||| | ||||| |||||||| | || ||||||||||| | Sbjct 160906 GATCATCAAACTTGCGACCAATCATACGTTTCGCATCAAAGACTGTGTTGGTTGGATTCA 160965 Query 518547 TTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACAT 518606 |||| |||||| || || ||||| |||| ||| | |||||||||||||| | |||| Sbjct 160966 TTGCCACTTGATTCTTTGCGGCATCACCAACAAGACGCTCTGTCTCTGTAAACGCCACAT 161025 Query 518607 ATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCC 518666 |||| || |||||||| || ||||||||||| || || || || |||| |||| | Sbjct 161026 ATGAAGGTGTTGTGCGGTTTCCTTGATCATTAGCGATGATCTCCACTTGGTCATTCTTGA 161085 Query 518667 ATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | ||||| |||||| | | ||||| || | |||||||||||||||| Sbjct 161086 AGACACCAACACAAGAATAGGTTGTGCCAAGATCAATACCAATAGCA 161132 >seq275 Length=1012172 Score = 113 bits (124), Expect = 3e-19 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 870801 TTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAA 870860 |||| |||| ||||||||| || ||||| || ||||||||| | |||||| | |||| | Sbjct 608610 TTGTGGATTTTTCTTCTCCTAACATTGCAAAGGAAATGCATGTGGGACATCTCCGATCTA 608669 Query 870861 CTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTA 870920 | |||||||||||| ||||| || | | || ||| ||| |||||| |||| | Sbjct 608670 CAATTATTGGTGAAGCTATTAGTCGCCTTTTTGAATACTGTCAGTTTGATGTTCATCGCA 608729 Query 870921 TTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTATA 870971 | ||||| |||||||||||||| ||| || || ||| | ||| ||||| Sbjct 608730 TCAATCACGTGGGTGATTGGGGTACTGCCTTTGGAATGCTTATT--TTATA 608778 >seq258 Length=245094 Score = 100 bits (110), Expect = 2e-15 Identities = 135/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 |||||||||||||| |||||||| |||||||| ||||| |||| ||| | || || Sbjct 204624 GAATTTTTCTTCCATACCATGGCAGGACGTGAAGGACTTATTGATACAGCTGTGAAGACA 204683 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779 | |||||||||||| | || | |||||| ||||| | |||||| | | | | Sbjct 204684 TCAGATACTGGTTATCTACAGCGTAAACTTATTAAAGCATTGGAAGATGTTCATGCCGCA 204743 Query 671780 TATGATGGTACAGTAAGAAATGCAAATGGTAAACTTATATCATGTGTTTATGGTGATAAT 671839 |||||||||||||| | ||||| ||| ||||||| | | | |||||||| || Sbjct 204744 TATGATGGTACAGTTCGTAATGCCAATCAAGAACTTATTCAACTTATGTATGGTGAAGAT 204803 Query 671840 GGTATTA 671846 || |||| Sbjct 204804 GG-ATTA 204809 >seq66 Length=549782 Score = 96.9 bits (106), Expect = 3e-14 Identities = 96/123 (78%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 367000 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAT 367059 || || || || ||||| ||||| ||||||||||| |||||| | ||||||||||| Sbjct 312027 GCTACTATTGCTTTTGGAATGGGAATTAATAAACCAGATGTTCGTTTTGTTATTCAT--- 312083 Query 367060 GGAGCT---CCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 367116 | ||| || || ||||||||| ||||||||||||| ||| |||| ||||||||| Sbjct 312084 GCAGCGATGCCTAAATCTATTGAAGGGTATTATCAAGAAAGTGGACGAGCTGGTCGTGAT 312143 Query 367117 GGA 367119 ||| Sbjct 312144 GGA 312146 >seq166 Length=457962 Score = 89.7 bits (98), Expect = 4e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 636704 GAACCTGTTTATTATGCTCCTATTATTCCAATGATACTTGTAAATGGAGCTGAAGGAATT 636763 |||||| ||||||||| |||||||||||||||| |||||||||||||| || || ||| Sbjct 232269 GAACCTTTTTATTATGTTCCTATTATTCCAATGGTACTTGTAAATGGAACTTCTGGTATT 232210 Query 636764 GGTACTGGATATTCAACAAAAATT 636787 || || |||| | |||| || ||| Sbjct 232209 GGAACAGGATTTGCAACTAATATT 232186 >seq193 Length=2144 Score = 87.8 bits (96), Expect = 1e-11 Identities = 179/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 || || || ||||||| ||||| || | || || |||| | || | | |||| Sbjct 603 ACCTTGAAGGGCCAGTGCTTCATGTCCGCCTGCACCACCGGGTCGCTGAACTTGCGACCA 544 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || | || || || || |||| || |||||||| || || || | || | || || Sbjct 543 ATGAGGCGCTTCGCGTCGAAAACGGTGTTGGTTGGGTTCATCGCCACCTGGTTCTTCGCC 484 Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626 || || |||||||| | || || || ||||| | || || || || || ||||| || Sbjct 483 GCGTCACCAATCAGGCGCTCCGTGTCGGTAAACGCCACGTACGACGGTGTCGTGCGGTTT 424 Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 518686 ||||||||||| ||||| || || || | || ||||| ||||| || || | Sbjct 423 CCTTGATCATTGGCAATGATCTCCACACGCTCGTTCTGCCACACACCCACGCACGAGTAC 364 Query 518687 GTTGTTCCTAAATCAATACCAATAGC 518712 ||||| || | |||||||| || || Sbjct 363 GTTGTGCCGAGGTCAATACCGATCGC 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780806570169214